7e2340e0b897f6a6d3102d2fd8e12d14796432e5 lrnassar Thu Aug 1 14:19:57 2019 -0700 Including hub.txt in the makefile, so changes can be made from tree #23734 diff --git src/hg/makeDb/doc/VGP/makefile src/hg/makeDb/doc/VGP/makefile index 4b4cabf..0c8c72e 100644 --- src/hg/makeDb/doc/VGP/makefile +++ src/hg/makeDb/doc/VGP/makefile @@ -1,24 +1,27 @@ destDir=/hive/data/genomes/asmHubs/VGP/ucscNames srcDir=${HOME}/kent/src/hg/makeDb/doc/VGP -all:: ${destDir}/genomes.txt +all:: ${destDir}/genomes.txt ${destDir}/hub.txt ls -og ${destDir}/hubIndex.html ${destDir}/asmStatsVGP.html ls -og ${destDir}/genomes.txt ${destDir}/commonNameOrder.list classList=amphibian.list bird.list fish.list mammal.list reptile.list # this mkHubIndex.pl also writes out a commonNameOrder.list that # is used by mkAsmStats.pl and mkGenomes.pl to order their listings ${destDir}/hubIndex.html: ${srcDir}/mkHubIndex.pl ${srcDir}/commonNames.txt ${classList} cd ${destDir} && ${srcDir}/mkHubIndex.pl > $@ chmod 775 $@ ${destDir}/asmStatsVGP.html: ${destDir}/hubIndex.html ${srcDir}/mkAsmStats.pl cd ${destDir} && ${srcDir}/mkAsmStats.pl > $@ chmod 775 $@ ${destDir}/genomes.txt: ${destDir}/asmStatsVGP.html ${srcDir}/mkGenomes.pl cd ${destDir} && ${srcDir}/mkGenomes.pl > $@ +${destDir}/hub.txt: ${srcDir}/hub.txt + rm $@ + cp -p ${srcDir}/hub.txt $@