0ccdf5567e3bebd6c9fb5737c0fa06302998a1f6
chmalee
  Fri Aug 30 10:20:26 2019 -0700
Changing comment from ls-snp to mupit as per code review, refs #24047

diff --git src/hg/lib/lsSnpPdbChimera.c src/hg/lib/lsSnpPdbChimera.c
index a7ce67c..f59ad78 100644
--- src/hg/lib/lsSnpPdbChimera.c
+++ src/hg/lib/lsSnpPdbChimera.c
@@ -130,41 +130,41 @@
 {
 
 char query[256], buf[32];
 sqlSafef(query, sizeof(query), "SELECT structType FROM lsSnpPdb WHERE (pdbId = \"%s\")",
       pdbId);
 char *structType = sqlNeedQuickQuery(conn, query, buf, sizeof(buf));
 if (sameString(structType, "XRay"))
     return "X-Ray";
 else if (sameString(structType, "NMR"))
     return "NMR";
 else
     return NULL;
 }
 
 boolean lsSnpPdbHasPdb(struct sqlConnection *conn, char *pdbId)
-/* determine if the specified PDB has any entries in LS-SNP */
+/* determine if the specified PDB has any entries in MuPIT (formerly LS-SNP) */
 {
 if (!sqlTableExists(conn, "knownToMupit"))
     return FALSE;
 char query[256], buf[64];
 sqlSafef(query, sizeof(query), "SELECT value FROM knownToMupit WHERE value = \"%s\" limit 1", pdbId);
 return (sqlQuickQuery(conn, query, buf, sizeof(buf)) != NULL);
 }
 
 char *lsSnpPdbGetUrlPdbSnp(char *pdbId, char *snpId)
-/* get LS-SNP/PDB URL for a particular PDB and/or SNP.  One or the two
+/* get MuPIT (formerly LS-SNP) URL for a particular PDB and/or SNP.  One or the two
  * ids maybe null */
 {
 char url[256];
 safecpy(url, sizeof(url), "http://mupit.icm.jhu.edu/MuPIT_Interactive/?structure_id=");
 if (pdbId != NULL)
     {
     safecat(url, sizeof(url), pdbId);
     }
 return cloneString(url);
 }
 
 void lsSnpPdbChimeraGenericLink(char *pdbSpec, char *script,
                                 char *trashDirName, char *trashBaseName,
                                 struct tempName *chimerax)
 /* Generate a chimerax file for the given pdbSpec, which can be a PDB id or a