ff57913e526139de4da96e2984cd89f8c15a0df0
hiram
  Fri Aug 30 15:26:42 2019 -0700
correct biosample URL to NCBI refs #23771

diff --git src/hg/utils/automation/makeDownloads.pl src/hg/utils/automation/makeDownloads.pl
index 73a47ba..822293a 100755
--- src/hg/utils/automation/makeDownloads.pl
+++ src/hg/utils/automation/makeDownloads.pl
@@ -623,30 +623,31 @@
   my ($Organism, $assemblyDate, $assemblyLabel,
       $organism, $consortium, $sequencingCenter, $projectUrl) =
 	&getDescriptives();
   my $fh = &HgAutomate::mustOpen(">$runDir/README.database.txt");
   print $fh <<_EOF_
 This directory contains a dump of the UCSC genome annotation database for the
     $assemblyDate assembly of the $organism genome
     ($db, $assemblyLabel) $consortium.
 
 The annotations were generated by UCSC and collaborators worldwide.
 
 For more information about this assembly, please note the NCBI resources:
     https://www.ncbi.nlm.nih.gov/genome/$ncbiGenomeId
     https://www.ncbi.nlm.nih.gov/genome/assembly/$ncbiAssemblyId
     https://www.ncbi.nlm.nih.gov/bioproject/$ncbiBioProject
+    https://www.ncbi.nlm.nih.gov/biosample/$ncbiBioSample
 
 Files included in this directory (updated nightly):
 
   - *.sql files:  the MySQL commands used to create the tables
 
   - *.txt.gz files: the database tables in a tab-delimited format
     compressed with gzip.
 
 To see descriptions of the tables underlying Genome Browser annotation
 tracks, select the table in the Table Browser:
   http://genome.ucsc.edu/cgi-bin/hgTables?db=$db
 and click the "describe table schema" button.  There is also a "view
 table schema" link on the configuration page for each track.
 
 ---------------------------------------------------------------
@@ -717,31 +718,31 @@
   $emblLib = `head -100 /hive/data/staging/data/RepeatMasker/Libraries/RepeatMaskerLib.embl | grep -w RELEASE`;
   chomp $emblLib;
   $emblLib =~ s/CC\s*//;
   $emblLib =~ s/;\s*.*//;
 
   my $fh = &HgAutomate::mustOpen(">$runDir/README.bigZips.txt");
   print $fh <<_EOF_
 This directory contains the $assemblyDate assembly of the
     $organism genome ($db, $assemblyLabel),
     as well as repeat annotations and GenBank sequences.
 
 For more information about this assembly, please note the NCBI resources:
     https://www.ncbi.nlm.nih.gov/genome/$ncbiGenomeId
     https://www.ncbi.nlm.nih.gov/genome/assembly/$ncbiAssemblyId
     https://www.ncbi.nlm.nih.gov/bioproject/$ncbiBioProject
-    https://www.ncbi.nlm.nih.gov/bioproject/$ncbiBioSample
+    https://www.ncbi.nlm.nih.gov/biosample/$ncbiBioSample
 
 Files included in this directory:
 
 $db.2bit - contains the complete $organism/$db genome sequence
     in the 2bit file format.  Repeats from RepeatMasker and Tandem Repeats
     Finder (with period of 12 or less) are shown in lower case; non-repeating
     sequence is shown in upper case.  The utility program, twoBitToFa (available
     from the kent src tree), can be used to extract .fa file(s) from
     this file.  A pre-compiled version of the command line tool can be
     found at:
         http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/
     See also:
         http://genome.ucsc.edu/admin/git.html
 	http://genome.ucsc.edu/admin/jk-install.html
 
@@ -925,31 +926,31 @@
   # Dump out a README.txt for chromsomes/ .
   my ($runDir) = @_;
   my ($Organism, $assemblyDate, $assemblyLabel,
       $organism, $consortium, $sequencingCenter, $projectUrl) =
 	&getDescriptives();
   my $fh = &HgAutomate::mustOpen(">$runDir/README.chromosomes.txt");
   print $fh <<_EOF_
 This directory contains the $assemblyDate assembly of the
     $organism genome ($db, $assemblyLabel)
     in one gzip-compressed FASTA file per chromosome.
 
 For more information about this assembly, please note the NCBI resources:
     https://www.ncbi.nlm.nih.gov/genome/$ncbiGenomeId
     https://www.ncbi.nlm.nih.gov/genome/assembly/$ncbiAssemblyId
     https://www.ncbi.nlm.nih.gov/bioproject/$ncbiBioProject
-    https://www.ncbi.nlm.nih.gov/bioproject/$ncbiBioSample
+    https://www.ncbi.nlm.nih.gov/biosample/$ncbiBioSample
 
 Repeats from RepeatMasker and Tandem Repeats Finder (with period
 of 12 or less) are shown in lower case; non-repeating sequence is
 shown in upper case.
 
 This assembly was produced by $sequencingCenter.
 For more information on the $organism genome, see the project website:
   $projectUrl
 
 Files included in this directory:
 
   - chr*.fa.gz: compressed FASTA sequence of each chromosome.
 
 _EOF_
   ;