780fb29b38481270113febeaee49b8e30d8e8a61 ccpowell Thu Aug 15 13:38:26 2019 -0700 Editing the genome= section to customtracktext.html page, refs #22069 diff --git src/hg/htdocs/goldenPath/help/customTrackText.html src/hg/htdocs/goldenPath/help/customTrackText.html index cc7cda5..fa77b09 100755 --- src/hg/htdocs/goldenPath/help/customTrackText.html +++ src/hg/htdocs/goldenPath/help/customTrackText.html @@ -662,31 +662,31 @@
Step 1. Put your formatted annotation file on your web site. Be sure that the file permissions allow it to be read by others.
Step 2. Construct a URL that will link this annotation file to the Genome Browser. The URL must contain 3 pieces of information specific to your annotation data:
org=human
. To specify a particular genome assembly for an organism, use the
db parameter, db=database_name
, where database_name is the UCSC
code for the genome assembly. For a list of these codes, see the Genome Browser
FAQ. Examples of this include:
db=hg16 (Human July 2003 assembly), db=mm6 (Mouse Mar. 2005 assembly).genome=database_name
, which acts in the same manner as
the db parameter. Here is an example using the house mouse (Mus musculus, 129S1_SvImJ)
assembly hub:
http://genome.ucsc.edu/cgi-bin/hgTracks?genome=129S1_SvImJ&hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txtposition=chr_position
, where chr_position is a chromosome number, with
or without a set of coordinates. Examples of this include: position=chr22,
position=chr22:15916196-31832390.hgt.customText=URL
, where URL points to the annotation file on your website.
An example of an annotation file URL is http://genome.ucsc.edu/goldenPath/help/test.bed.