965f8f0f7e1d1579a542bd640ab42952f5b259f5
chmalee
  Tue Aug 13 09:03:24 2019 -0700
Fixing typo in lovd load script

diff --git src/hg/utils/otto/lovd/checkAndLoad.sh src/hg/utils/otto/lovd/checkAndLoad.sh
index 823aae7..740b02f 100755
--- src/hg/utils/otto/lovd/checkAndLoad.sh
+++ src/hg/utils/otto/lovd/checkAndLoad.sh
@@ -7,31 +7,31 @@
 WORKDIR="/hive/data/outside/otto/lovd"
 TAWK=/cluster/bin/scripts/tawk
 KENTBIN=/cluster/bin/x86_64/
 
 if [ ! -d "${WORKDIR}" ]; then
     echo "ERROR in lovd release, Can not find the directory: ${WORKDIR}" 
     exit 255
 fi
 
 cd "${WORKDIR}"
 today=`date +%F`
 cd $today
 
 # count columns and make sure new files have 6 columns
 new19Cc=`cat lovd.hg19.bed | $TAWK '(NF!=6)' | wc -l`
-new18Cc=`cat lovd.hg19.bed | $TAWK '(NF!=6)' | wc -l`
+new18Cc=`cat lovd.hg18.bed | $TAWK '(NF!=6)' | wc -l`
 if [ "$new19Cc" -ne "0" ]; then
         echo LVOD hg19 $today: found rows with not six columns, quitting
         exit 255
 fi
 if [ "$new18Cc" -ne "0" ]; then
         echo LVOD hg18 $today: found rows with not six columns, quitting
         exit 255
 fi
 
 # compare old and new line counts and abort if no increase
 old19Lc=`$KENTBIN/hgsql hg19 -e "SELECT COUNT(*) from lovd" -NB`
 new19Lc=`wc -l lovd.hg19.bed | cut -d' ' -f1 `
 old18Lc=`$KENTBIN/hgsql hg18 -e "SELECT COUNT(*) from lovd" -NB`
 new18Lc=`wc -l lovd.hg18.bed | cut -d' ' -f1 `