d85e73c10264f168a856e4fbebca929fb9cf4f0c kent Sun Aug 11 10:30:41 2019 -0700 Updating test set with replace function. diff --git src/tabFile/tabToTabDir/tests/spec.txt src/tabFile/tabToTabDir/tests/spec.txt index f5e9e66..4048845 100644 --- src/tabFile/tabToTabDir/tests/spec.txt +++ src/tabFile/tabToTabDir/tests/spec.txt @@ -1,41 +1,44 @@ table a_strex_test id id "constant ID" #assay long-RNA-seq +dashed assay[4:-3] long assay[:4] q assay[-1] RNA assay[5:8] seq assay[-3:] se assay[-3:-2] mm separate(submission_date, '-', 1) dd separate(submission_date, '-', 2) yyyy separate(submission_date, '-', 0) usaDate separate(submission_date, '-', 1) + '/' + separate(submission_date, '-', 2) + '/' + separate(submission_date, '-', 0) company split(fluidics_chip, 0) md5.sum md5(GEO_Series_summary) organ trim(between('human', title, 'transcriptome')) untrimmed_organ "'" + between('human', title, 'transcriptome') + "'" alphabet3 "abcdefg"[3] decade submission_date[2] crasho 1[1] abc "abcdefg" def "abcdefg"[3:6] abcd "abcdefg"[:4] efg "abcdefg"[4:] atoG "abcdefg"[:] fg "abcdefg"[-2:] array1 uncsv(GEO_Series_summary,1) +cutMid replace("abcdefg", "cde", "") +subSub replace("abcdefg", "abcdefg", "subSub") table project id id data_set_id title lab lab submitter table donor biosample_source_id biosample_source_id species biosample_source_gender biosample_source_age biosample_source_age_value biosample_source_age_unit # GEO_Sample_age looks like: prenatal 16-18 W