2c3972fb3e23b41e21a31fd55f8ee0eb483bdabf
lrnassar
  Tue Aug 13 08:59:32 2019 -0700
Adding FAQ entry for _alt _fix seqs and adding links from icPCR and hgBLAT refs #23291

diff --git src/hg/hgBlat/hgBlat.c src/hg/hgBlat/hgBlat.c
index 3589e6a..f26d55c 100644
--- src/hg/hgBlat/hgBlat.c
+++ src/hg/hgBlat/hgBlat.c
@@ -638,31 +638,32 @@
 	    psl->tStart, psl->tEnd, database, uiState);
 	printf("details</A> ");
 
 	printf("%s",psl->qName);
 	spaceOut(stdout, maxQChromNameSize - strlen(psl->qName));
 	printf(" %5d %5d %5d %5d   %5.1f%%  ",
 	    pslScore(psl), psl->qStart+1, psl->qEnd, psl->qSize,
 	    100.0 - pslCalcMilliBad(psl, TRUE) * 0.1);
 	printf("%s",psl->tName);
 	spaceOut(stdout, maxTChromNameSize - strlen(psl->tName));
 	printf("  %-2s  %9d %9d %6d\n",
 	    psl->strand, psl->tStart+1, psl->tEnd,
 	    psl->tEnd - psl->tStart);
 	}
     printf("</PRE>\n");
-    puts("<P style=\"text-align:right\"><SMALL><A HREF=\"../FAQ/FAQblat.html#blat1b\">Missing a match?</A></SMALL></P>\n");
+    webNewSection("Help");
+    puts("<P style=\"text-align:left\"><SMALL><A HREF=\"../FAQ/FAQblat.html#blat1b\">Missing a match?</A><br><A HREF=\"../FAQ/FAQblat.html#blat1c\">What is chr_alt & chr_fix?</A></SMALL></P>\n");
     puts("</DIV>\n");
     }
 pslFreeList(&pslList);
 
 }
 
 void trimUniq(bioSeq *seqList)
 /* Check that all seq's in list have a unique name.  Try and
  * abbreviate longer sequence names. */
 {
 struct hash *hash = newHash(0);
 bioSeq *seq;
 
 for (seq = seqList; seq != NULL; seq = seq->next)
     {