fcb3971566d6570959c4cd8022972d8f7c455ebc
chmalee
  Mon Aug 19 13:21:18 2019 -0700
Remove links to lssnp from dbSnp hgc pages, and change lssnp links to mupit on hgGene pages, refs #22953

diff --git src/hg/hgGene/domains.c src/hg/hgGene/domains.c
index f6d9e4d..395d411 100644
--- src/hg/hgGene/domains.c
+++ src/hg/hgGene/domains.c
@@ -155,58 +155,58 @@
 list = spExtDbAcc1List(spConn, swissProtAcc, "PDB");
 if (list != NULL)
     {
     struct sqlConnection *conn2 = sqlConnect(db);
     char query[256], **row;
     struct sqlResult *sr;
     int column = 0, maxColumn=3, rowCount=0;
     hPrintf("<B>Protein Data Bank (PDB) 3-D Structure</B><BR>");
     sqlSafef(query, sizeof(query),
     	"select extAcc1,extAcc2 from extDbRef,extDb"
 	" where extDbRef.acc = '%s'"
 	" and extDb.val = 'PDB' and extDb.id = extDbRef.extDb"
 	, swissProtAcc);
     sr = sqlGetResult(spConn, query);
     hPrintf("<TABLE><TR>\n");
+    hPrintf("<A href=\"../goldenPath/help/chimera.html\" TARGET=_blank>Chimera help</A>\n");
     while ((row = sqlNextRow(sr)) != NULL)
         {
 	if (++column > maxColumn)
 	    {
 	    hPrintf("</TR><TR>");
 	    column = 1;
 	    if (rowCount == 0)
 	        {
 		hPrintf("<TD ALIGN=CENTER COLSPAN=4><I>To conserve bandwidth, only the images from the first %d structures are shown.</I>", maxColumn);
 		hPrintf("</TR><TR>");
 		}
 	    ++rowCount;
 	    }
 	hPrintf("<TD>");
 	hPrintf("<A HREF=\"http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=%s\" TARGET=_blank>", row[0]);
 	if (rowCount < 1)
 	    hPrintf("<IMG SRC=\"http://www.rcsb.org/pdb/images/%s_asym_r_250.jpg\"><BR>", row[0]);
         hPrintf("%s</A> - %s ", row[0], row[1]);
-        // include links LS-SNP and to launch viewer in PDB chimera
+        // include links to MuPIT (formerly LS-SNP) and launch viewer in PDB chimera
         struct tempName chimerax;
         lsSnpPdbChimeraSnpAnn(conn, row[0], NULL, &chimerax);
         hPrintf(" <A HREF=\"%s\">Chimera</A>", chimerax.forHtml);
         if (lsSnpPdbHasPdb(conn2, row[0]))
-            hPrintf(" <A HREF=\"%s\" TARGET=_blank>LS-SNP</A>", lsSnpPdbGetUrlPdbSnp(row[0], NULL));
+            hPrintf(" <A HREF=\"%s\" TARGET=_blank>MuPIT</A>", lsSnpPdbGetUrlPdbSnp(row[0], NULL));
 	hPrintf("</TD>\n");
 	}
     hPrintf("</TR></TABLE>\n");
-    hPrintf("<A href=\"../goldenPath/help/chimera.html\" TARGET=_blank>Chimera help</A>\n");
     hPrintf("<BR><BR>\n");
     slFreeList(&list);
     sqlDisconnect(&conn2);
     }
 
 /* Do modBase link. */
     {
     hPrintf("<B>ModBase Predicted Comparative 3D Structure on ");
     modBaseAnchor(swissProtAcc);
     hPrintf("%s", swissProtAcc);
     hPrintf("</A></B><BR>\n");
 
     hPrintf("<TABLE><TR>");
     hPrintf("<TD>");
     modBaseAnchor(swissProtAcc);