da9d20019b8237cc0d3fa8bc79f49e0bb1a3e2c8 jnavarr5 Mon Aug 19 15:55:23 2019 -0700 Using the getTrackReferences script to generate the proper styling for the ENCODE paper for the history.html page, refs #20314 diff --git src/hg/htdocs/goldenPath/history.html src/hg/htdocs/goldenPath/history.html index c3d2803..cc2cf76 100755 --- src/hg/htdocs/goldenPath/history.html +++ src/hg/htdocs/goldenPath/history.html @@ -233,36 +233,39 @@ and functional information from the collective data.</p> <p> UC Santa Cruz worked closely with labs producing data for the ENCODE project and with data analysis groups to define data and metadata reporting standards for a broad range of genomics assays. They implemented data submission and validation pipelines, created and maintained the encodeproject.org website, developed user access tools for ENCODE data, exported all ENCODE data to repositories at the National Center for Biotechnology Information (NCBI), and provided outreach and tutorial support for the project.</p> <p> The Michael Cherry laboratory at Stanford University took over the ENCODE data coordination center in late 2012. UC Santa Cruz continues to support existing ENCODE data and resources on the UCSC Genome Browser website. Newer ENCODE data of broad interest, in particular, integrative and summary data, will be incorporated into the browser.</p> <p> <em>The following paper describes ENCODE resources at UC Santa Cruz:</em></p> -<p class="text-center"> +<p> Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, Maddren M, Fang R, -Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC, Wilder SP, Zweig AS, Karolchik D, -Kuhn RM, Haussler D, Kent WJ. <a href="https://www.ncbi.nlm.nih.gov/pubmed/23193274" -target="_blank">ENCODE data in the UCSC Genome Browser: year 5 update.</a> Nucleic Acids Res. 2013 -Jan;41(Database issue):D56-63.</p> +Heitner SG <em>et al</em>. +<a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gks1172" target="_blank"> +ENCODE data in the UCSC Genome Browser: year 5 update</a>. +<em>Nucleic Acids Res</em>. 2013 Jan;41(Database issue):D56-63. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/23193274" target="_blank">23193274</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531152/" target="_blank">PMC3531152</a> +</p> <h3>More about the ENCODE Project</h3> <ul> <li> <a href="https://www.encodeproject.org/" target="_blank">ENCODE data portal</a></li> <li> <a href="https://www.nytimes.com/2008/11/11/science/11gene.html" target="_blank">New York Times article: "Now: the rest of the genome"</a></li> <li> <a href="https://www.genome.gov/11009066/" target="_blank">NHGRI announcement of the ENCODE Project</a></li> </ul> <a name="primer"></a> <h2>UCSC Genome Research Primer</h2>