d97dbc73b0b17df995a94a1dffcab2b02e569910 ccpowell Tue Sep 17 11:42:13 2019 -0700 Updating newsarch.html for the grcIncidentDb track for galGal6 and danRer11, refs #24024 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 6e39d43..c1e9aaf 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -38,30 +38,54 @@ </ul> </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> +<a name="09192019"></a> +<h2>Sep. 19, 2019 nbsp; New GRC Incident track for Chicken (galGal6) and Zebrafish (danRer11) +</h2> +<p> +We are pleased to announce the release of the GRC Incident track for both Chicken (galGal6) and +Zebrafish (danRer11). This track shows locations in the chicken assembly where assembly problems +have been noted or resolved, as reported by the +<a href="https://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/index.shtml" target="_blank"> +Genome Reference Consortium (GRC)</a>. +<ul> + <li> <a href="../cgi-bin/hgTracks?db=galGal6&hideTracks=1&grcIncidentDb=pack&refSeqComposite=squish&knownGene_sel=1&position=chr1%3A81414-19700000" + target="_blank">Chicken (galGal6) GRC Incident Database track</a></li> + <li> <a href="../cgi-bin/hgTracks?db=danRer11&hideTracks=1&grcIncidentDb=pack&refSeqComposite=squish&knownGene_sel=1" + target="_blank">Zebrafish (danRer11) GRC Incident Database track</a></li> +</ul> +</p> +<p> +Data for this track are extracted from the GRC <a href="ftp://ftp.ncbi.nlm.nih.gov/pub/grc/" +target="_blank">incident database</a> from the specific species *_issues.gff3 file. The track is +synchronized once daily to incorporate new updates. +</p> +<p> +Thanks to Hiram Clawson and Conner Powell for the development and release of these tracks +</p> <a name="090419"></a> <h2>Sep. 4, 2019 New Genome Browser: Rhesus, rheMac10 (<em>Macaca mulatta</em>)</h2> <p> A genome browser is now available for the rhesus monkey (<em>Macaca mulatta</em>) assembly released in Feb. 2019 by the <a href="https://www.genome.wustl.edu/" target="_blank">Genome Institute at Washington University School of Medicine</a> (Mmul_10). <h3>About the assembly:</h3> <ul> <li><b>UCSC Genome Browser assembly ID:</b> <a href="../../cgi-bin/hgGateway?db=rheMac10" target="_blank">rheMac10</a></li> <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.genome.wustl.edu/"> The Genome Institute at Washington University School of Medicine</a></li> <li><b>Assembly date:</b> Feb. 2019</li>