ea73d04b05c28fa98e2dd13862fc5a2c6b4b3adc ccpowell Tue Sep 17 15:04:06 2019 -0700 Editing newsarch.html for grc incident track release, refs #24024 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index c1e9aaf..a249a36 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,52 +39,55 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> <a name="09192019"></a> -<h2>Sep. 19, 2019 nbsp; New GRC Incident track for Chicken (galGal6) and Zebrafish (danRer11) +<h2>Sep. 19, 2019 New GRC Incident track for Chicken (galGal6) and Zebrafish (danRer11) </h2> <p> -We are pleased to announce the release of the GRC Incident track for both Chicken (galGal6) and -Zebrafish (danRer11). This track shows locations in the chicken assembly where assembly problems +We are pleased to announce the release of a GRC Incident track for both the Chicken +(<a href="../cgi-bin/hgTrackUi?&db=galGal6&g=grcIncidentDb" target="_blank">galGal6</a>) and +Zebrafish (<a href="../cgi-bin/hgTrackUi?&db=danRer11&g=grcIncidentDb" target="_blank">danRer11</a>) +assemblies. +These tracks show locations in the Chicken and Zebrafish assemblies where assembly problems have been noted or resolved, as reported by the <a href="https://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/index.shtml" target="_blank"> Genome Reference Consortium (GRC)</a>. <ul> <li> <a href="../cgi-bin/hgTracks?db=galGal6&hideTracks=1&grcIncidentDb=pack&refSeqComposite=squish&knownGene_sel=1&position=chr1%3A81414-19700000" target="_blank">Chicken (galGal6) GRC Incident Database track</a></li> <li> <a href="../cgi-bin/hgTracks?db=danRer11&hideTracks=1&grcIncidentDb=pack&refSeqComposite=squish&knownGene_sel=1" target="_blank">Zebrafish (danRer11) GRC Incident Database track</a></li> </ul> </p> <p> -Data for this track are extracted from the GRC <a href="ftp://ftp.ncbi.nlm.nih.gov/pub/grc/" -target="_blank">incident database</a> from the specific species *_issues.gff3 file. The track is -synchronized once daily to incorporate new updates. +Data for these tracks are extracted from the <a href="ftp://ftp.ncbi.nlm.nih.gov/pub/grc/" +target="_blank">GRC incident database</a> from the specific species *_issues.gff3 file. The tracks are +updated daily from the GRC server to incorporate new updates. </p> <p> -Thanks to Hiram Clawson and Conner Powell for the development and release of these tracks +Thanks to Hiram Clawson and Conner Powell for the development and release of these tracks. </p> <a name="090419"></a> <h2>Sep. 4, 2019 New Genome Browser: Rhesus, rheMac10 (<em>Macaca mulatta</em>)</h2> <p> A genome browser is now available for the rhesus monkey (<em>Macaca mulatta</em>) assembly released in Feb. 2019 by the <a href="https://www.genome.wustl.edu/" target="_blank">Genome Institute at Washington University School of Medicine</a> (Mmul_10). <h3>About the assembly:</h3> <ul> <li><b>UCSC Genome Browser assembly ID:</b> <a href="../../cgi-bin/hgGateway?db=rheMac10" target="_blank">rheMac10</a></li> <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.genome.wustl.edu/"> The Genome Institute at Washington University School of Medicine</a></li>