Commits for kate

v388_preview2 to v388_base (2019-09-16 to 2019-09-23) v388

84a498e5605cb332998c9650c2e254ea4993d739 Mon Sep 16 10:15:55 2019 -0700

• Add note about forcing interactions to pack in MR mode. From JK input. refs #24037
  • src/hg/hgc/interactClick.c - lines changed 1, context: html, text, full: html, text

c3077e2a7da1c10641ac87799738d68e3525670d Mon Sep 16 10:39:04 2019 -0700

• Make setting conform to our flexible convention. refs #24037
  • src/hg/hgc/interactClick.c - lines changed 1, context: html, text, full: html, text

66fd7cc1b66487ccc2864b670c100e244fe3add2 Mon Sep 16 10:50:19 2019 -0700

• Add multiregion setting to trackDb docs. refs #24037
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 6, context: html, text, full: html, text

79f2015bd4a398a8e9eece9c457cbeba41ca5831 Mon Sep 16 10:54:12 2019 -0700

• Aim for a little consistency. sigh. refs #24037
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 1, context: html, text, full: html, text

213a9ed6ded66b132124cce8bc4850b40c37aa5d Wed Sep 18 13:23:02 2019 -0700

• Tweak text on page, responding to QA. refs #24037
  • src/hg/hgc/interactClick.c - lines changed 2, context: html, text, full: html, text

6b2423fa6f1713f7d4f5d4569eebf5fecd13edf2 Wed Sep 18 13:46:07 2019 -0700

• Format citations and update based on input from data provider (D. Gorkin. refs #23880
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenAtac.html - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenChromHmm.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenHistone.html - lines changed 36, context: html, text, full: html, text

3e17a5dd38b22e37e7c31cb9983272e58900d41b Wed Sep 18 17:32:52 2019 -0700

• Add graphic of mouse developmental stages assayed by ENCODE 3, from Ren lab. refs #23880
  • src/hg/htdocs/images/renMouseDev.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/mouse/mm10/encode3Reg.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenAtac.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenChromHmm.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenHistone.html - lines changed 6, context: html, text, full: html, text

666a852700dda342c2ba7aaa712e135025c9be44 Wed Sep 18 17:57:37 2019 -0700

• Correct ages in labels, etc. to include .5, as per input from Ren lab. refs #23880
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.atac.ra - lines changed 229, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.chromHmm.ra - lines changed 58, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra - lines changed 1965, context: html, text, full: html, text

67d66a7d1e5c5de9b9ecbea41238cb19f52515b7 Thu Sep 19 11:03:58 2019 -0700

• Remove superfluous metadata lines. refs #23880
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.atac.ra - lines changed 133, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra - lines changed 1126, context: html, text, full: html, text

df271bddabee40852bdef2312e616e8b49a9a4ff Thu Sep 19 11:37:24 2019 -0700

• Expand histone descriptive table and reorder subtracks based on input from data provider, D. Gorkin. refs #23693
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra - lines changed 1129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenHistone.html - lines changed 42, context: html, text, full: html, text

07c5245a60a9edfae0ea9f7b71a08e867db23ab9 Thu Sep 19 11:38:32 2019 -0700

• Add graphic of mouse development. refs #23880
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.chromHmm.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.html - lines changed 4, context: html, text, full: html, text