4a819ccfe7f5074c2295daacd838731fe59534fb max Tue Sep 17 02:16:07 2019 -0700 new avada track, refs #24156 diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt index 73f74f2..a4b90bd 100644 --- src/hg/makeDb/doc/hg19.txt +++ src/hg/makeDb/doc/hg19.txt @@ -33598,15 +33598,23 @@ -syntenicNet) > swap.log 2>&1 # real 56m29.163s cat fb.rheMac10.chainHg19Link.txt # 2483311773 bases of 2936892733 (84.556%) in intersection cat fb.rheMac10.chainSynHg19Link.txt # 2461925388 bases of 2936892733 (83.828%) in intersection time (doRecipBest.pl -workhorse=hgwdev -load -buildDir=`pwd` rheMac10 hg19) > rbest.log 2>&1 # real 112m15.825s cat fb.rheMac10.chainRBest.Hg19.txt # 2423781773 bases of 2936892733 (82.529%) in intersection ######################################################################### +2019-09-17: AVADA fulltext variants, Max +cd /hive/data/genomes/hg19/bed/avada +wget http://bejerano.stanford.edu/AVADA/avada_v1.00_2016.vcf.gz +python ~/kent/src/hg/makeDb/avada/toBed.py > avada.bed +bedToBigBed avada.bed /hive/data/genomes/hg19/chrom.sizes -as=${HOME}/kent/src/hg/makeDb/avada/avada.as -tab avada.bb -type=bed9+ +cd /gbdb/hg19/bbi +ln -s /hive/data/genomes/hg19/bed/avada/avada.bb +#########################################################################