fae82da25126fb8f6f14386243b858defe2f8ad5
max
  Thu Sep 19 06:10:57 2019 -0700
ottomating the archive for mastermind, refs #24157

diff --git src/hg/utils/otto/mastermind/buildMastermind.sh src/hg/utils/otto/mastermind/buildMastermind.sh
index 9f6434b..d5abf53 100755
--- src/hg/utils/otto/mastermind/buildMastermind.sh
+++ src/hg/utils/otto/mastermind/buildMastermind.sh
@@ -17,15 +17,23 @@
 wget 'https://mastermind.genomenon.com/cvr/download?build=grch37&format=csv' -O archive/$date/hg19.zip
 wget 'https://mastermind.genomenon.com/cvr/download?build=grch38&format=csv' -O archive/$date/hg38.zip
 unzip -o archive/$date/hg19.zip -d archive/$date
 unzip -o archive/$date/hg38.zip -d archive/$date
 python mastermindToBed.py hg19/chromAlias.tab archive/$date/mastermind_cited_variants_reference-*-grch37.csv hg19/mastermind.bed
 python mastermindToBed.py hg38/chromAlias.tab archive/$date/mastermind_cited_variants_reference-*-grch38.csv hg38/mastermind.bed
 bedSort hg19/mastermind.bed hg19/mastermind.bed
 bedSort hg38/mastermind.bed hg38/mastermind.bed
 bedToBigBed -type=bed9+ -as=mastermind.as -tab hg19/mastermind.bed /hive/data/genomes/hg19/chrom.sizes  hg19/mastermind.new.bb
 bedToBigBed -type=bed9+ -as=mastermind.as -tab hg38/mastermind.bed /hive/data/genomes/hg38/chrom.sizes  hg38/mastermind.new.bb
 curl -s https://mastermind.genomenon.com/cvr/version | cut -d\" -f4 > mastermindRelease.new.txt
 mv mastermindRelease.new.txt mastermindRelease.txt
 mv hg19/mastermind.new.bb hg19/mastermind.bb
 mv hg38/mastermind.new.bb hg38/mastermind.bb
 
+# build archive
+REL=`cat mastermindRelease.txt`
+ARCH=/hive/data/outside/otto/archive/mastermind
+mkdir -p $ARCH/$REL/{hg19,hg38}
+cp hg19/mastermind.bb $ARCH/$REL/hg19/
+cp hg38/mastermind.bb $ARCH/$REL/hg38/
+hgsql hg19 -e 'select * from trackDb where tableName="mastermind"' > $ARCH/$REL/hg19/trackDb.tab
+hgsql hg38 -e 'select * from trackDb where tableName="mastermind"' > $ARCH/$REL/hg38/trackDb.tab