Commits for braney

v387_base to v388_preview (2019-09-02 to 2019-09-09) v388

12d023ae3337d8909508d543d9d78c99758b25c5 Mon Sep 2 10:29:34 2019 -0700

• add cumulative auto-scaling to composites and views. Remove REMOTE_TRACK_AJAX_CALLBACK stuff that was apparently an experiment from ten years ago.
  • src/hg/hgTracks/hgTracks.c - lines changed 120, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 14, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 38, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c - lines changed 42, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/trackDb.h - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 20, context: html, text, full: html, text

79124adf60b5a8e99e4025e8f982389e13db955e Wed Sep 4 15:09:02 2019 -0700

• starting V32 of hg38 knownGene
  • src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes20.sh - lines changed 1040, context: html, text, full: html, text
  • src/hg/makeDb/kgAllocId/kgAllocId.c - lines changed 154, context: html, text, full: html, text
  • src/hg/makeDb/kgAllocId/makefile - lines changed 3, context: html, text, full: html, text

7f3fbe8639b9eecae13d8e2c3637a748b746f147 Thu Sep 5 07:11:47 2019 -0700

• Gencode V32 trackDb changes
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

a3e70739aa74b73a688d2638013eab96c2692dea Thu Sep 5 11:46:00 2019 -0700

• Use the string "Gencode Genes" instead of "Known Genes" in hgFind if the track is Gencode
  • src/hg/lib/hgFind.c - lines changed 3, context: html, text, full: html, text

decef64a3ad7fb887848c70df9dd1d95a5d05cef Fri Sep 6 14:14:09 2019 -0700

• mostly done with GencodeV32 knownGene
  • src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes20.sh - lines changed 308, context: html, text, full: html, text

1fc980dbe4d0907a809564f5d2d83c1e0835741c Mon Sep 9 10:07:24 2019 -0700

• v388 preview1, refs #24021
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text