f4e9ca27e2813217552c483235a528c0dd5edd19
hiram
  Wed Sep 4 10:20:47 2019 -0700
list schema needs to handle big* files correctly refs #23589

diff --git src/hg/hubApi/tests/makefile src/hg/hubApi/tests/makefile
index 9f5a9db..0a2dcc4 100644
--- src/hg/hubApi/tests/makefile
+++ src/hg/hubApi/tests/makefile
@@ -1,29 +1,29 @@
 
 test:: all
 
 all:: test0 listFunctions getFunctions listSchema getSequence wigData \
 	supportedTypes errorTests notSupported bugReports
 
 listFunctions: list01 list02 list03 list04 list05 list06 list07 list08 list09 \
 	list10 list11 list12 list13 list14 list15
 
 getFunctions: test6 test7 test8 test9 test10 test11 test12 test13 test14 \
 	test15 test16 test19 test21 test26 test27 test28 \
 	test29 test39 test40
 
-listSchema: schema01 schema02 schema03 schema04 schema05
+listSchema: schema01 schema02 schema03 schema04 schema05 schema06 schema07
 
 getSequence: getSeq01 getSeq02 getSeq03
 
 wigData: wig01 wig02 wig03 wig04 wig05 wig06 wig07 wig08 wig09 wig10 \
 	wig11 wig12 wig13 wig14 wig15 wig16 wig17 wig18 wig19 wig20 \
 	wig21 wig22 wig23 wig24
 
 supportedTypes: altGraphX barChart chain ctgPos expRatio factorSource gvf \
 	interact netAlign peptideMapping pgSnp
 
 errorTests: err01 err02 err03 err04 err05 err06 err07 err08 err09 err10 \
 	err11 err12 err13 err14 err15 err16 err17 err18 err19 err20 \
 	err21 err22 err23 err24 err25 err26 err27 err28 err29 err30 \
 	err31 err32 err33 err34 err35 err36 err37 err38 err39
 
@@ -286,30 +286,42 @@
 	@printf "### $@ 'https://hgwdev-hiram.gi.ucsc.edu/list/schema?track=gold;genome=ce2'\n"
 	@./jsonConsumer.pl -endpoint="/list/schema" -genome="ce2" -track=gold | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 schema04: setOutput
 	@printf "### $@ 'https://hgwdev-hiram.gi.ucsc.edu/list/schema?track=assembly;genome=araTha1;hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt'\n"
 	@./jsonConsumer.pl -endpoint="/list/schema" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome="araTha1" -track=assembly | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # can list schema for tables without trackDb
 schema05: setOutput
 	@printf "### $@ 'https://hgwdev-hiram.gi.ucsc.edu/list/schema?track=chromAlias;genome=hg38'\n"
 	@./jsonConsumer.pl -endpoint="/list/schema" -genome="hg38" -track=chromAlias | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
+# list schema for bigBed file via table fileName reference
+schema06: setOutput
+	@printf "### $@ 'https://hgwdev-hiram.gi.ucsc.edu/list/schema?track=crispr10KTargets;genome=hg38'\n"
+	@./jsonConsumer.pl -endpoint="/list/schema" -genome="hg38" -track=crispr10KTargets | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# list schema for bigWig file with table and bigWig file
+schema07: setOutput
+	@printf "### $@ 'https://hgwdev-hiram.gi.ucsc.edu/list/schema?track=gc5BaseBw;genome=ce11'\n"
+	@./jsonConsumer.pl -endpoint="/list/schema" -genome="ce11" -track=gc5BaseBw | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
 ###############################################################################
 #  ERROR testing
 ###############################################################################
 # generate an error: ask for non-existent chrom in a track hub
 # /getData/track? hubUrl Plants &track=assembly&chrom=chrI&start=1&end=14309681
 err01: setOutput
 	@printf "### $@ https://hgwdev-api.gi.ucsc.edu/getData/track?track=assembly;chrom=chrI;genome=araTha1;hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;end=14309681;start=1\n"
 	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt" -genome="araTha1" -track="assembly" -chrom="chrI" -start=1 -end=14309681 2>&1 | sed -e 's#https://.*/getData#/getData#;' | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # error test, can not open bigWig file
 err02: setOutput
 	@printf "### $@ https://hgwdev-api.gi.ucsc.edu/getData/track?track=gc5Base;chrom=chrA9;genome=braRap1;hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/bPlants/hub.txt\n"
 	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://genome-test.gi.ucsc.edu/~hiram/hubs/bPlants/hub.txt" -genome="braRap1" -track="gc5Base" -chrom=chrA9 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz