f630e910fa3bf0edff8347bd8c914606318c041e
hiram
  Mon Sep 9 10:02:02 2019 -0700
liftOver to rheMac10 refs #23771

diff --git src/hg/makeDb/doc/rheMac8/initialBuild.txt src/hg/makeDb/doc/rheMac8/initialBuild.txt
index cea828b..84ffd60 100644
--- src/hg/makeDb/doc/rheMac8/initialBuild.txt
+++ src/hg/makeDb/doc/rheMac8/initialBuild.txt
@@ -556,15 +556,33 @@
     #   check for errors in stderr.out, some are OK, e.g.:
     # WARNING: hgwdev does not have /gbdb/rheMac8/wib/gc5Base.wib
     # WARNING: hgwdev does not have /gbdb/rheMac8/wib/quality.wib
     # WARNING: hgwdev does not have /gbdb/rheMac8/bbi/quality.bw
     # WARNING: rheMac8 does not have seq
     # WARNING: rheMac8 does not have extFile
 
     #   copy it to hgwbeta
     scp -p rheMac8.pushQ.sql qateam@hgwbeta:/tmp/
     ssh qateam@hgwbeta "./bin/x86_64/hgsql qapushq < /tmp/rheMac8.pushQ.sql"
 
     #   in that pushQ entry walk through each entry and see if the
     #   sizes will set properly
 
 #########################################################################
+# LIFTOVER TO rheMac10 (DONE - 2019-07-02 - Hiram)
+    ssh hgwdev
+    mkdir /hive/data/genomes/rheMac8/bed/blat.rheMac10.2019-07-02
+    cd /hive/data/genomes/rheMac8/bed/blat.rheMac10.2019-07-02
+    doSameSpeciesLiftOver.pl -verbose=2 \
+        -debug -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+        -ooc=/hive/data/genomes/rheMac8/jkStuff/rheMac8.11.ooc \
+         rheMac8 rheMac10
+    time (doSameSpeciesLiftOver.pl -verbose=2 \
+        -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+        -ooc=/hive/data/genomes/rheMac8/jkStuff/rheMac8.11.ooc \
+         rheMac8 rheMac10) > doLiftOverToRheMac10.log 2>&1
+XXX - running - Tue Jul  2 08:12:49 PDT 2019
+    # real    1015m0.435s
+
+    # see if the liftOver menus function in the browser from rheMac8 to rheMac10
+
+#########################################################################