4fdac1a09cb6a154a2f739885b02fc8f0e40a00d hiram Mon Sep 9 09:57:59 2019 -0700 first instance of hub is complete refs #23734 diff --git src/hg/makeDb/doc/VGP/makefile src/hg/makeDb/doc/VGP/makefile index c38496e..c97bf05 100644 --- src/hg/makeDb/doc/VGP/makefile +++ src/hg/makeDb/doc/VGP/makefile @@ -1,36 +1,36 @@ # for GNU Make automatic variable documentation, see also: # https://www.gnu.org/software/make/manual/html_node/Automatic-Variables.html destDir=/hive/data/genomes/asmHubs/VGP/ucscNames srcDir=${HOME}/kent/src/hg/makeDb/doc/VGP all:: ${destDir}/genomes.txt ${destDir}/hub.txt ${destDir}/groups.txt - @ls -og ${destDir}/hubIndex.html ${destDir}/asmStatsVGP.html + @ls -og ${destDir}/index.html ${destDir}/asmStatsVGP.html @ls -og ${destDir}/commonNameOrder.list @ls -og $^ classList=amphibian.list bird.list fish.list mammal.list reptile.list # this mkHubIndex.pl also writes out a commonNameOrder.list that # is used by mkAsmStats.pl and mkGenomes.pl to order their listings -${destDir}/hubIndex.html: ${srcDir}/mkHubIndex.pl ${srcDir}/commonNames.txt ${classList} +${destDir}/index.html: ${srcDir}/mkHubIndex.pl ${srcDir}/commonNames.txt ${classList} cd ${destDir} && ${srcDir}/mkHubIndex.pl > $@ chmod 775 $@ -${destDir}/asmStatsVGP.html: ${destDir}/hubIndex.html ${srcDir}/mkAsmStats.pl +${destDir}/asmStatsVGP.html: ${destDir}/index.html ${srcDir}/mkAsmStats.pl cd ${destDir} && ${srcDir}/mkAsmStats.pl > $@ chmod 775 $@ ${destDir}/genomes.txt: ${destDir}/asmStatsVGP.html ${srcDir}/mkGenomes.pl cd ${destDir} && ${srcDir}/mkGenomes.pl > $@ cd ${destDir} && ${srcDir}/mkSymLinks.sh ${destDir}/hub.txt: ${srcDir}/hub.txt rm $@ cp -p $< $@ ${destDir}/groups.txt: ${srcDir}/groups.txt rm $@ cp -p $< $@