23688dbba6229bdf678dee3d1f07f763e5751d41 lrnassar Wed Sep 4 14:21:02 2019 -0700 Adding new assembly rheMac10 to newsArch page #23771 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 9674720..6e39d43 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,71 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> +<a name="090419"></a> +<h2>Sep. 4, 2019 New Genome Browser: Rhesus, rheMac10 (<em>Macaca mulatta</em>)</h2> +<p> +A genome browser is now available for the rhesus monkey (<em>Macaca mulatta</em>) assembly +released in Feb. 2019 by the +<a href="https://www.genome.wustl.edu/" +target="_blank">Genome Institute at Washington University School of Medicine</a> (Mmul_10). +<h3>About the assembly:</h3> +<ul> + <li><b>UCSC Genome Browser assembly ID:</b> <a href="../../cgi-bin/hgGateway?db=rheMac10" + target="_blank">rheMac10</a></li> + <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.genome.wustl.edu/"> +The Genome Institute at Washington University School of Medicine</a></li> + <li><b>Assembly date:</b> Feb. 2019</li> + <li><B>Accession ID:</B> GCF_003339765.1</li> + <li><B>NCBI Genome ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/genome/215" +TARGET="_blank">215</A> (<em>Macaca mulatta</em>)</li> + <li><B>NCBI Assembly ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/assembly/2345051" +TARGET="_blank">2345051</A></li> + <li><B>NCBI BioProject ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/bioproject/476474" +TARGET="_blank">476474</A></li> + <li><B>NCBI BioSample ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/biosample/SAMN09435472" +TARGET="_blank">SAMN09435472</A></li> + <li><b>Scaffold count: </b>2,979</li> + <li><b>Total size: </b>2,971,331,530</li> + <li><a href="../goldenPath/credits.html#rhesus_credits" +target="_blank" >Acknowledgments</a></li> +</ul> +<h3>Data and Downloads:</h3> +<ul> + <li><a href="../goldenPath/credits.html#rhesus_use" +target="_blank" >Data use conditions and restrictions</a></li> + <li><a href="../goldenPath/help/ftp.html" +target="_blank" >Rsync</a> and +<a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/rheMac10/" +target="_blank" >FTP</a></li> + <li><a href="http://hgdownload.soe.ucsc.edu/downloads.html#rhesus" +target="_blank" >Downloads page</a></li> +</ul> +</p> + <a name="082819"></a> <h2>Aug. 28, 2019 Vertebrate Genomes Project assembly hub</h2> <p> The UCSC Genome Browser is proud to announce its <a href="https://hgdownload.soe.ucsc.edu/hubs/VGP/" target="_blank">Vertebrate Genomes Project assembly hub</a>. The <a href="https://vertebrategenomesproject.org/" target="_blank">Vertebrate Genomes Project (VGP)</a> aims to generate near error-free reference genome assemblies of all 70,000 extant vertebrate species.</p> <p> As of now, the <a href="https://hgdownload.soe.ucsc.edu/hubs/VGP/" target="_blank">VGP assembly hub</a> includes 24 vertebrate assemblies. See our <a href="https://hgdownload.soe.ucsc.edu/hubs/VGP/asmStatsVGP.html" target="_blank">assembly statistics page</a> for specific information (gap counts,