66b5c5da59e6f7a59d559c0f68f37841cad1eb4b lrnassar Mon Sep 2 11:38:37 2019 -0700 Nesting new rheMac10 assembly in proper conservation track refs #23771 diff --git src/hg/makeDb/trackDb/human/chainNetPrimate.ra src/hg/makeDb/trackDb/human/chainNetPrimate.ra index 3af31c4..5e55302 100644 --- src/hg/makeDb/trackDb/human/chainNetPrimate.ra +++ src/hg/makeDb/trackDb/human/chainNetPrimate.ra @@ -194,37 +194,37 @@ longLabel $o_db ($o_date) Chained Alignments type chain colAng1 otherDb colAng1 track chainMacFas5 subTrack primateChainNetViewchain off subGroups view=chain species=s020 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain macFas5 otherDb macFas5 #include chainNetRheMac8.ra #include chainNetRheMac10.ra - track chainRheMac3 + track chainRheMac10 subTrack primateChainNetViewchain off subGroups view=chain species=s022 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments - type chain rheMac3 - otherDb rheMac3 + type chain rheMac10 + otherDb rheMac10 track chainRheMac2 subTrack primateChainNetViewchain off subGroups view=chain species=s023 clade=c01 shortLabel $o_db Chain longLabel $o_db ($o_date) Chained Alignments type chain rheMac2 otherDb rheMac2 track chainPapAnu4 subTrack primateChainNetViewchain off subGroups view=chain species=s024 clade=c01 shortLabel $o_db Chain longLabel $o_db ($o_date) Chained Alignments type chain papAnu4 @@ -584,37 +584,37 @@ subTrack primateChainNetViewnet off subGroups view=net species=s019 clade=c01 shortLabel $o_db Net longLabel $o_db ($o_date) Alignment Net type netAlign colAng1 chainColAng1 otherDb colAng1 track netMacFas5 subTrack primateChainNetViewnet off subGroups view=net species=s020 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign macFas5 chainMacFas5 otherDb macFas5 - track netRheMac3 + track netRheMac10 subTrack primateChainNetViewnet off subGroups view=net species=s022 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net - type netAlign rheMac3 chainRheMac3 - otherDb rheMac3 + type netAlign rheMac10 chainRheMac10 + otherDb rheMac10 track netRheMac2 subTrack primateChainNetViewnet off subGroups view=net species=s023 clade=c01 shortLabel $o_db Net longLabel $o_db ($o_date) Alignment Net type netAlign rheMac2 chainRheMac2 otherDb rheMac2 track netPapAnu4 subTrack primateChainNetViewnet off subGroups view=net species=s024 clade=c01 shortLabel $o_db Net longLabel $o_db ($o_date) Alignment Net type netAlign papAnu4 chainPapAnu4