778cb733e935272196ce9dc65f51bdc38ebccebb
markd
  Tue Sep 3 10:51:42 2019 -0700
import of prerelease of GENCODE V32, VM23, and V32lift37

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index f93ee88..e7b0e6c 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -33493,15 +33493,46 @@
 
     # Update human/hg19/wgEncodeGencodeSuper.html and update 'Release Notes'
     # to describe new release. [ONLY if it's going to be pushed]
 
     # edit human/hg19/trackDb.wgEncode.ra to add new .ra file include
     make DBS=hg19
 
     # edit  all.joiner to add ~/tmp/gencodeV31lift37.joiner
     # verify with:
     pushd /hive/data/genomes/hg19/bed/gencodeV31lift37
     make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # commit all
 
 ##############################################################################
+2019-09-03: import of UCSC GENCODE group processing of GENCODE V32lift37 (markd)
+    # PRE-RELEASE
+    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
+
+    # download, build and load tables
+    mkdir -p /hive/data/genomes/hg19/bed/gencodeV32lift37
+    pushd /hive/data/genomes/hg19/bed/gencodeV32lift37
+    (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
+
+    # compare tables from previous release to see if number changed makes
+    # sense.  Results are in gencode-cmp.tsv
+
+    # generate trackDb and joiner blurb
+    pushd ~/kent/src/hg/makeDb/trackDb
+    ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg19 32lift37 98 'Sept 2019'
+
+    # Update human/hg19/wgEncodeGencodeSuper.html and update 'Release Notes'
+    # to describe new release. [ONLY if it's going to be pushed]
+
+    # edit human/hg19/trackDb.wgEncode.ra to add new .ra file include
+    make DBS=hg19
+
+    # edit  all.joiner to add ~/tmp/gencodeV32lift37.joiner
+    # verify with:
+    pushd /hive/data/genomes/hg19/bed/gencodeV32lift37
+    make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
+
+    # commit all
+
+##############################################################################
+