778cb733e935272196ce9dc65f51bdc38ebccebb
markd
  Tue Sep 3 10:51:42 2019 -0700
import of prerelease of GENCODE V32, VM23, and V32lift37

diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt
index cb132b6..e9f593a 100644
--- src/hg/makeDb/doc/hg38/gencode.txt
+++ src/hg/makeDb/doc/hg38/gencode.txt
@@ -498,15 +498,48 @@
     # to describe new release. [ONLY if it's going to be pushed]
 
     # edit human/hg38/trackDb.gencode.ra to add new .ra file include
     make DBS=hg38
 
     ## only if being pushed to RR:
     # edit all.joiner to add ~/tmp/gencodeV31.joiner
     # verify with:
     pushd /hive/data/genomes/hg38/bed/gencodeV31
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # commit all
     # if pushing public, add ticket and MARK QA READY
 
 #########################################################################
+2019-08-30: import of UCSC GENCODE group processing of GENCODE V32 (markd)
+    # PRE-RELEASE
+    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
+
+    # download, build and load tables
+    mkdir -p /hive/data/genomes/hg38/bed/gencodeV32
+    pushd /hive/data/genomes/hg38/bed/gencodeV32
+
+    (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
+
+    # compare tables from previous release to see if number changed makes
+    # sense.  Results are in gencode-cmp.tsv
+
+    # generate trackDb and joiner blurb
+    pushd ~/kent/src/hg/makeDb/trackDb
+    ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg38 32 98 'Sept 2019'
+
+    # If being pushed public, update 'Release Notes' in
+    # human/hg38/wgEncodeGencodeSuper.html
+
+    # edit human/hg38/trackDb.gencode.ra to add new .ra file include
+    make DBS=hg38
+
+    ## only if being pushed to RR:
+    # edit all.joiner to add ~/tmp/gencodeV32.joiner
+    # verify with:
+    pushd /hive/data/genomes/hg38/bed/gencodeV32
+    make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
+
+    # commit all
+    # if pushing public: add ticket and MARK QA READY
+
+#########################################################################