9a26b7380a408f1ed968d72f1b3cff18f2a1e054 max Mon Sep 9 02:41:20 2019 -0700 fixing clinvar typo added in last commit and also a missing _mouseOver field (very strange problem, possibly have not committed this file for a long time?) diff --git src/hg/utils/otto/clinvar/clinvar.as src/hg/utils/otto/clinvar/clinvar.as index 4cc36ea..a08f9cb 100644 --- src/hg/utils/otto/clinvar/clinvar.as +++ src/hg/utils/otto/clinvar/clinvar.as @@ -1,36 +1,37 @@ table clinVarBed "Browser extensible data (12 fields) plus information about a ClinVar entry" ( string chrom; "Chromosome (or contig, scaffold, etc.)" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name of item" uint score; "Score from 0-1000" char[1] strand; "+ or -" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "Used as itemRgb as of 2004-11-22" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" lstring origName; "ClinVar Variation Report" string clinSign; "Clinical significance" string reviewStatus; "Review Status" string type; "Type of Variant" string geneId; "Gene Symbol" string snpId; "dbSNP ID" string nsvId; "dbVar ID" lstring rcvAcc; "ClinVar Allele Submission" string testedInGtr; "Genetic Testing Registry" lstring phenotypeList; "Phenotypes" lstring phenotype; "Phenotype identifiers" string origin; "Data origin" string assembly; "Genome assembly" string cytogenetic; "Cytogenetic status" lstring hgvsCod; "Nucleotide HGVS" lstring hgvsProt; "Protein HGVS" string numSubmit; "Number of submitters" string lastEval; "Last evaluation" string guidelines; "Guidelines" lstring otherIds; "Other identifiers e.g. OMIM IDs, etc." + lstring _mouseOver; "Mouse over text" )