File Changes for kate

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v388_preview to v388_preview2 (2019-09-09 to 2019-09-16) v388

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src/hg/hgTracks/hgTracks.h
- lines changed 1, context: html, text, full: html, text
  af461ddaef211c16a3ca52913df3f4c9a95ed48d Thu Sep 12 13:38:55 2019 -0700
  Extend labelOnFeature setting to support dense mode w/o labels (as usual in our tracks). Using this feature in chromatin state tracks. refs #24128
src/hg/hgTracks/simpleTracks.c
- lines changed 13, context: html, text, full: html, text
  af461ddaef211c16a3ca52913df3f4c9a95ed48d Thu Sep 12 13:38:55 2019 -0700
  Extend labelOnFeature setting to support dense mode w/o labels (as usual in our tracks). Using this feature in chromatin state tracks. refs #24128
src/hg/hgc/interactClick.c
- lines changed 21, context: html, text, full: html, text
  601ece4d47e590855e1232bc968593299fc4b703 Wed Sep 11 11:09:09 2019 -0700
  Clean up and expand interactMultiRegion trackDb seetting to specify padding. Needed for transEqtl (huge and chross-chrom interactions). refs #24037
src/hg/makeDb/trackDb/mouse/mm10/encode3.atac.ra
- lines changed 1091, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
- lines changed 18, context: html, text, full: html, text
  fb30d552b09686ac1f7d26d10ea821c0e3a0f821 Wed Sep 11 14:56:49 2019 -0700
  Correct P0 long labels. refs #23970
- lines changed 133, context: html, text, full: html, text
  5f8bd704e0605123dfdd32087d8fd70f74091676 Wed Sep 11 15:19:20 2019 -0700
  Minor label relabeling and file renaming. refs #23880
- lines changed 35, context: html, text, full: html, text
  5b98413917254114a1219389ec8b9ee0668df170 Wed Sep 11 16:43:50 2019 -0700
  Tweak default on tracks. refs #23990
src/hg/makeDb/trackDb/mouse/mm10/encode3.chromHmm.ra
- lines changed 477, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
- lines changed 9, context: html, text, full: html, text
  1b9178e6f9a4093b47848db5d037a704c7352749 Wed Sep 11 15:01:09 2019 -0700
  Correct P0 long labels. refs #24128
- lines changed 67, context: html, text, full: html, text
  5f8bd704e0605123dfdd32087d8fd70f74091676 Wed Sep 11 15:19:20 2019 -0700
  Minor label relabeling and file renaming. refs #23880
- lines changed 15, context: html, text, full: html, text
  a7926f9fedb679fc0a1fade0c4f21311d7f32dc6 Wed Sep 11 15:28:18 2019 -0700
  Trim shortlabels. refs #24128
- lines changed 8, context: html, text, full: html, text
  5b98413917254114a1219389ec8b9ee0668df170 Wed Sep 11 16:43:50 2019 -0700
  Tweak default on tracks. refs #23990
- lines changed 4, context: html, text, full: html, text
  af461ddaef211c16a3ca52913df3f4c9a95ed48d Thu Sep 12 13:38:55 2019 -0700
  Extend labelOnFeature setting to support dense mode w/o labels (as usual in our tracks). Using this feature in chromatin state tracks. refs #24128
src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra
- lines changed 11296, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
- lines changed 1126, context: html, text, full: html, text
  da82c8df231e66625b605ff7dac241d47d3ee0dc Wed Sep 11 14:55:02 2019 -0700
  Replace offending dots in track names from Ren lab hub. refs #23693
- lines changed 173, context: html, text, full: html, text
  5b98413917254114a1219389ec8b9ee0668df170 Wed Sep 11 16:43:50 2019 -0700
  Tweak default on tracks. refs #23990
src/hg/makeDb/trackDb/mouse/mm10/encode3Reg.html
- lines changed 11, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
- lines changed 1, context: html, text, full: html, text
  0ad9db5d262850c4b159bad0eb9831ddd1e97cbb Wed Sep 11 15:11:54 2019 -0700
  Fix link. refs #23880
- lines changed 1, context: html, text, full: html, text
  70eb0c6ecc1ae9d8cc66c1bc59e477ac1eb91d9f Wed Sep 11 15:18:19 2019 -0700
  Add link. refs #23880
src/hg/makeDb/trackDb/mouse/mm10/encode3RenAtac.html
- lines changed 75, context: html, text, full: html, text
  2876cdada90cb8d845ab0b06cec817f83346400a Thu Sep 12 13:59:17 2019 -0700
  Add color patches to track description. refs #23693
- lines changed 0, context: html, text, full: html, text
  fe51985b7657e446612d290edc989d5861a4fa4e Fri Sep 13 09:33:52 2019 -0700
  Remove DOS line ends.
src/hg/makeDb/trackDb/mouse/mm10/encode3RenChromHmm.html
- lines changed 70, context: html, text, full: html, text
  f6e23d1d07c38b1a7cefd03393ec92856d5bb71c Thu Sep 12 12:42:57 2019 -0700
  Polish track description. refs #24128
- lines changed 5, context: html, text, full: html, text
  af461ddaef211c16a3ca52913df3f4c9a95ed48d Thu Sep 12 13:38:55 2019 -0700
  Extend labelOnFeature setting to support dense mode w/o labels (as usual in our tracks). Using this feature in chromatin state tracks. refs #24128
src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.html
- lines changed 50, context: html, text, full: html, text
  cd91480db30f283eddedba67051be27b6522ec15 Wed Sep 11 14:40:34 2019 -0700
  Refine long labels. refs #23693
src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.ra
- lines changed 126, context: html, text, full: html, text
  cd91480db30f283eddedba67051be27b6522ec15 Wed Sep 11 14:40:34 2019 -0700
  Refine long labels. refs #23693
- lines changed 24, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
- lines changed 29, context: html, text, full: html, text
  36cb847f6b7291b1cb47fa503dbfd3c9beca741d Wed Sep 11 17:10:11 2019 -0700
  Fix up filename problem. refs #23881
src/hg/makeDb/trackDb/mouse/mm10/encode3RenHistone.html
- lines changed 8, context: html, text, full: html, text
  2876cdada90cb8d845ab0b06cec817f83346400a Thu Sep 12 13:59:17 2019 -0700
  Add color patches to track description. refs #23693
src/hg/makeDb/trackDb/mouse/mm10/enhancerGeneInteract.html
- lines changed 50, context: html, text, full: html, text
  172d7a0e89e4ad6b243adad0fc6c5b97abd93052 Tue Aug 6 16:28:07 2019 -0700
  Add track description. refs #23881
- lines changed 50, context: html, text, full: html, text
  cd91480db30f283eddedba67051be27b6522ec15 Wed Sep 11 14:40:34 2019 -0700
  Refine long labels. refs #23693
src/hg/makeDb/trackDb/mouse/mm10/trackDb.atac.ra
- lines changed 1221, context: html, text, full: html, text
  0704d60df5fb8dca2aacab2a553477397bb26af1 Wed Aug 7 16:42:47 2019 -0700
  Add ATAC-seq track, tune up track config for related tracks. refs #23970
- lines changed 69, context: html, text, full: html, text
  8d264f60e756c0949a00e443988305e45ea1d695 Mon Sep 9 15:19:41 2019 -0700
  Use pooled bed files (update from Ren lab). refs #23970
- lines changed 65, context: html, text, full: html, text
  52415ddd22b076a8da4d20f36fa5bd417eec9a92 Mon Sep 9 15:24:45 2019 -0700
  Remove superfluous lines. refs #23880
- lines changed 66, context: html, text, full: html, text
  d13cfad020fadc5a52eaa649b048308f593da89e Mon Sep 9 15:28:04 2019 -0700
  Cleanup. refs #23880
- lines changed 1091, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
src/hg/makeDb/trackDb/mouse/mm10/trackDb.chromHmm.ra
- lines changed 70, context: html, text, full: html, text
  0704d60df5fb8dca2aacab2a553477397bb26af1 Wed Aug 7 16:42:47 2019 -0700
  Add ATAC-seq track, tune up track config for related tracks. refs #23970
- lines changed 477, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
src/hg/makeDb/trackDb/mouse/mm10/trackDb.encode3.ra
- lines changed 9, context: html, text, full: html, text
  c1e0d2307cfe3e7c75cfd54ae8626a797d5b7adb Sun Jul 28 20:20:04 2019 -0700
  Enhancer/gene interact track. refs #23881
- lines changed 8, context: html, text, full: html, text
  75f11715852d9fc54c7f0eb6b7a12665d913fd7e Wed Jul 31 16:43:00 2019 -0700
  Track config for mouse enhancer/gene track from Ren lab + EPDNew. refs #23881
- lines changed 1, context: html, text, full: html, text
  0704d60df5fb8dca2aacab2a553477397bb26af1 Wed Aug 7 16:42:47 2019 -0700
  Add ATAC-seq track, tune up track config for related tracks. refs #23970
- lines changed 3, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
- lines changed 1, context: html, text, full: html, text
  ecdc82eb342c99c36ac63c963cd2261003595a0f Wed Sep 11 16:44:37 2019 -0700
  Tweak default on tracks. refs #23990
src/hg/makeDb/trackDb/mouse/mm10/trackDb.enhancerGeneInteract.ra
- lines changed 64, context: html, text, full: html, text
  75f11715852d9fc54c7f0eb6b7a12665d913fd7e Wed Jul 31 16:43:00 2019 -0700
  Track config for mouse enhancer/gene track from Ren lab + EPDNew. refs #23881
- lines changed 83, context: html, text, full: html, text
  52f070230fc74d3e6b45fc5ac13d4a8b051d7b0a Tue Aug 6 15:48:19 2019 -0700
  Expand to two datasets (all and replicated), following pattern of GeneHancer. refs #23881
- lines changed 2, context: html, text, full: html, text
  0704d60df5fb8dca2aacab2a553477397bb26af1 Wed Aug 7 16:42:47 2019 -0700
  Add ATAC-seq track, tune up track config for related tracks. refs #23970
- lines changed 7, context: html, text, full: html, text
  280b6ce6b208cdb9a6c78f22de7eca58ac9d7710 Wed Sep 11 10:27:22 2019 -0700
  Clarification on long labels. refs #23693
- lines changed 126, context: html, text, full: html, text
  cd91480db30f283eddedba67051be27b6522ec15 Wed Sep 11 14:40:34 2019 -0700
  Refine long labels. refs #23693
src/hg/makeDb/trackDb/mouse/mm10/trackDb.histones.ra
- lines changed 18, context: html, text, full: html, text
  0704d60df5fb8dca2aacab2a553477397bb26af1 Wed Aug 7 16:42:47 2019 -0700
  Add ATAC-seq track, tune up track config for related tracks. refs #23970
- lines changed 1127, context: html, text, full: html, text
  b48c2ab7665ace5fbbb62dd8496a759f7533bf02 Mon Aug 12 09:10:09 2019 -0700
  Swap short label orders to match other tracks. refs #23693
- lines changed 144, context: html, text, full: html, text
  280b6ce6b208cdb9a6c78f22de7eca58ac9d7710 Wed Sep 11 10:27:22 2019 -0700
  Clarification on long labels. refs #23693
- lines changed 1129, context: html, text, full: html, text
  cd91480db30f283eddedba67051be27b6522ec15 Wed Sep 11 14:40:34 2019 -0700
  Refine long labels. refs #23693
- lines changed 11296, context: html, text, full: html, text
  5968091eaab76ed5b489b355fb9e98d70fd2d3f2 Wed Sep 11 14:51:25 2019 -0700
  Cleanup ra files, add html. refs #23880
src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
- lines changed 5, context: html, text, full: html, text
  75f11715852d9fc54c7f0eb6b7a12665d913fd7e Wed Jul 31 16:43:00 2019 -0700
  Track config for mouse enhancer/gene track from Ren lab + EPDNew. refs #23881
- lines changed 1, context: html, text, full: html, text
  5f8bd704e0605123dfdd32087d8fd70f74091676 Wed Sep 11 15:19:20 2019 -0700
  Minor label relabeling and file renaming. refs #23880

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