7cbbd19f17a3044b489c37e460643e7826eb6022 brianlee Thu Oct 10 16:19:11 2019 -0700 Adjusting image size auto-scale setting announcement refs #3420 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index d9a4c2d..2d4dc40 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -53,45 +53,45 @@ <a name="101119"></a> <h2>Oct. 11, 2019 New "group auto-scale" option</h2> <p> A new "group auto-scale" option is now available for signal tracks collected together in composites. The original auto-scale setting, which is still available, acts to auto-scale each track individually inside a composite group. With the new "group auto-scale" setting, all of the tracks within the composite will scale to the track with the highest auto-scale value viewed in the region.</p> <p> For example, below is a side-by-side image of two views of the same data from a selection of cell lines within a composite of related RNA-seq experiments. On the left is the original "auto-scale to data view" setting, where each track is auto-scaled to appear at each track's highest value. And on the right is the new "group auto-scale" setting for the same RNA-seq data where all tracks -are scaled against the one track that has the highest value (67215 for IMR9 cell TAP + 1) -in the region.</p> +are scaled against the one track in the region that has the highest value +(67215 for IMR9 cell TAP + 1).</p> <p class="text-center"> - <img class='text-center' src="../images/groupAutoScale.png" width='800' alt="Auto-scale comparison"> + <img class='text-center' src="../images/groupAutoScale.png" width='600' alt="Auto-scale comparison"> </p> <p> While the original auto-scale setting on the left has the advantage of showing any available data calibrated to each track's maximum, the new "group auto-scale" setting on the right quickly draws attention to the track with the highest signal within the composite group.</p> <p> -The new "group auto-scale" setting can be found for signal tracks within a -composite under the "Data viewing scaling:" options. +The new setting can be found for signal tracks within a composite group +under the "Data view scaling:" options. <p class="text-center"> - <img class='text-center' src="../images/groupAutoSetting.png" width='800' alt="Scaling options"> + <img class='text-center' src="../images/groupAutoSetting.png" width='400' alt="Scaling options"> </p> <a name="100919"></a> <h2>Oct. 9, 2019 Expanded CRISPR track released for human (hg38/GRCh38)</h2> <p> We are pleased to announce the release of an expanded <a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack&crisprAllTargets=pack&position=chr7:116397500-116398000" target="_blank">CRISPR Targets track</a> for the human hg38/GRCh38 assembly. This track shows the DNA sequences targetable by CRISPR RNA guides using the Cas9 enzyme from S. pyogenes (PAM: NGG) over the entire human genome. CRISPR target sites were annotated with predicted specificity (off-target effects) and predicted efficiency (on-target cleavage) by various algorithms through the tool <a href="http://crispor.tefor.net/" target="_blank">CRISPOR</a>. The target sequence of the guide is shown with a thick (exon) bar. The PAM motif match (NGG) is shown with a thinner bar. </p> <p class="text-center">