Commits for jnavarr5

v389_preview2 to v389_base (2019-10-07 to 2019-10-14) v389

7f892f8fa5f41b18d489cfdbb0255c05b1b3e3f3 Mon Oct 7 10:55:15 2019 -0700

• Updating http to https for hg19, uiLinks cronjob.
  • src/hg/makeDb/trackDb/cgapSage.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fishClones.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/coriellDelDup.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cytoBand.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/geneHancer.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/gtexGeneExpr.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/gtexTranscExpr.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/allHg19RS_BW.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/burgeRnaSeqGemMapperAlign.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/chainSelf.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/cons100way.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/cons46way.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/consIndelsHgMmCanFam.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/denisovaMethylation.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/dhcBamDenisova.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/dhcHumDerDenAnc.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/dhcVcfDenisovaPinky.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/dhcVcfModern.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/evsEsp6500.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/exoniphy.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/genomicSuperDups.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/genotypeArrays.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gnomad.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gwipsvizRiboseq.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/hinv70Composite.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/neandertalMethylation.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/pgSnp.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/polyASeqSites.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase1.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase1Accessibility.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase3.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase3Accessibility.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/uMassBrainHistone.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/ucscRetroAli5.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV17.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV24lift37.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgRna.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.back - lines changed 50, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hgIkmc.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hiSeqDepth.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/lovd.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/omimAvSnp.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/placentalChainNet.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/primateChainNet.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp150Common.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp151Common.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/stsMap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/vertebrateChainNet.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/recombRate.html - lines changed 1, context: html, text, full: html, text

05fe2aa1f5c3f2730cdc72669b9cda4bd74d455f Mon Oct 7 12:01:25 2019 -0700

• Staging the v32 GENCODE track for hg38. Copying the contents from knownGene.alpha.html to the live HTML file. Removing an accidentally added file, knownGene.back (backup of knownGene.ra) from my uiLinks commit. refs #24032
  • src/hg/makeDb/trackDb/human/hg38/knownGene.back - lines changed 50, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.html - lines changed 69, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

668414388523c2effa3f4f0948900dd4dd30852d Mon Oct 7 14:19:18 2019 -0700

• Clarifying the previous version in the Old UCSC Genes track description page for hg38, refs #24032
  • src/hg/makeDb/trackDb/human/hg38/knownGeneOld11.html - lines changed 2, context: html, text, full: html, text

5cf0c242b31fa4d3929d19b485b5c5f5cdf1824e Wed Oct 9 09:46:35 2019 -0700

• Updating http to https for sacCer1, uiLinks cronjob.
  • src/hg/makeDb/trackDb/sacCer/multizYeast.html - lines changed 2, context: html, text, full: html, text

6ca88a128e05455bc0a55b9b40d26779140ba12e Mon Oct 14 09:47:30 2019 -0700

• Updating http to https for xenTro1, uiLinks cronjob.
  • src/hg/makeDb/trackDb/xenTro/xenTro1/multiz5way.html - lines changed 3, context: html, text, full: html, text