c9e2acd282cda244daf6e9ecb4feaea2b1994df7
kate
  Tue Oct 8 11:25:31 2019 -0700
Adding download times to build doc. refs #21782

diff --git src/hg/makeDb/doc/hg38/gnomad.txt src/hg/makeDb/doc/hg38/gnomad.txt
index 7f3df43..f2f461b 100644
--- src/hg/makeDb/doc/hg38/gnomad.txt
+++ src/hg/makeDb/doc/hg38/gnomad.txt
@@ -14,39 +14,48 @@
 
 mkdir hg38; cd hg38
 mkdir -p /gbdb/hg38/gnomAD/vcf
 
 # Download from GRCh38 liftover section of downloads page:
 https://gnomad.broadinstitute.org/downloads#variants-grch38-liftover
 
 wget https://storage.googleapis.com/gnomad-public/release/2.1.1/README.txt
 
 # Exome variants
 
 # vcf
 # 85.31 GiB, MD5: cff8d0cfed50adc9211d1feaed2d4ca7
 wget https://storage.googleapis.com/gnomad-public/release/2.1.1/liftover_grch38/vcf/exomes/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz >&! wget.exomes.log &
 
+# from log: 20 minutes download time
+# --2019-10-07 16:40:48--  https://storage.googleapis.com/gnomad-public/release/2.1.1/liftover_grch38/vcf/exomes/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz
+# 2019-10-07 17:00:52 (72.6 MB/s) - 'gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz' saved [91604348731/91604348731]
+
 du -sh *.bgz
 # 171G    gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz
 
 md5sum gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz
 # cff8d0cfed50adc9211d1feaed2d4ca7  gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz
 
 ln -s `pwd`/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz /gbdb/hg38/gnomAD/vcf/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.gz
 
 # index file
 wget https://storage.googleapis.com/gnomad-public/release/2.1.1/liftover_grch38/vcf/exomes/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz.tbi
 
 ln -s `pwd`/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.bgz.tbi /gbdb/hg38/gnomAD/vcf/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.gz.tbi
 
 # Genomes Variants
 # 743.06 GiB, MD5: 83de3d5b52669f714e810d4fcf047c18
 wget https://storage.googleapis.com/gnomad-public/release/2.1.1/liftover_grch38/vcf/genomes/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.bgz >&! wget.genomes.log &
+
+# from log:  3 hrs download time
+#--2019-10-07 17:03:11--  https://storage.googleapis.com/gnomad-public/release/2.1.1/liftover_grch38/vcf/genomes/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.bgz
+# 2019-10-07 20:02:56 (70.6 MB/s) - 'gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.bgz' saved [797851733355/797851733355]
+
 ln -s `pwd`/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.bgz /gbdb/hg38/gnomAD/vcf/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.gz
 
 wget https://storage.googleapis.com/gnomad-public/release/2.1.1/liftover_grch38/vcf/genomes/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.bgz.tbi
 ln -s `pwd`/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.bgz.tbi /gbdb/hg38/gnomAD/vcf/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.gz.tbi
 
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 Use/adapt trackDb and HTML from hg19 track