318a5c110a86569bd4e4b8fd7263c684245e6049 lrnassar Thu Oct 10 10:54:48 2019 -0700 Changing JSON API to REST API and adding new entry to API help page refs #24282 diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index 5d459bb..49d46fd 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -1254,33 +1254,33 @@ or <code>ftp://hgdownload-euro.soe.ucsc.edu/goldenPath/</code> will take you to a directory that contains the genome download directories. This download method is not recommended if you plan to download a large file or multiple files from a single directory compared to rsync (see above). You can, however, use the <code>mget</code> command to download multiple files: <code>mget <em>filename1 filename2</em></code>, or <code>mget -a</code> (to download all the files in the directory).</dd> <dt>Via the Downloads link:</dt> <dd> Click the <a href="http://hgdownload.soe.ucsc.edu/downloads.html" target="_blank">Downloads</a> link on the left side bar on the UCSC Genome Browser home page to display a list of all database directories available for download. If the data you wish to download pre-dates the assembly versions listed, look for the data on our <a href="http://hgdownload.soe.ucsc.edu/downloads.html" target="_blank">Downloads</a> page.</dd> - <dt>Via the JSON API:</dt> + <dt>Via the REST API:</dt> <dd> - The <a href='./api.html' target=_blank>JSON API</a> can be used to query both annotation + The <a href='./api.html' target=_blank>REST API</a> can be used to query both annotation and sequence data from any UCSC genome assembly or hub.</dd> </dl> <h3>Types of data available</h3> <p> There may be several download directories associated with each version of a genome assembly: the full data set <em>(bigZips)</em>, the full data set by chromosome <em>(chromosome)</em>, the annotation database tables <em>(database)</em>, and one or more sets of comparative cross-species alignments.</p> <p> <em>BigZips</em> contains the entire draft of the genome in chromosome and/or contig form. Depending on the genome, this directory may contain some or all of the following files:</p> <ul> <li> <strong>chromAgp.zip:</strong> Description of how the assembly was generated, unpacking to one