1bdc19b509135df21441ea3d232d2e1ae976ff4f lrnassar Mon Oct 7 11:02:02 2019 -0700 Fixing data access crispr10k linkouts refs #24270 diff --git src/hg/makeDb/trackDb/crispr10K.html src/hg/makeDb/trackDb/crispr10K.html index a9095e5..cb24aa3 100644 --- src/hg/makeDb/trackDb/crispr10K.html +++ src/hg/makeDb/trackDb/crispr10K.html @@ -125,38 +125,38 @@ includes the Doench 2016, Moreno-Mateos 2015 and Bae 2014 algorithms, among others. Note that the Doench 2016 scores were updated by the Broad institute in 2017 ("Azimuth" update). As a result, earlier versions of the track show the old Doench 2016 scores and the 10k version of the track shows new Doench 2016 scores. Old and new scores are almost identical, they are correlated to 0.99 and for more than 80% of the guides the difference is below 0.02. However, for very few guides, the difference can be bigger. In case of doubt, we recommend the new scores. Crispor.org can display both scores and many more with the "Show all scores" link.</p> <H2>Data Access</H2> <p> The raw data can be explored interactively with the <a href="../cgi-bin/hgTables">Table Browser</a>. For automated analysis, the genome annotation is stored in a bigBed file that can be downloaded from -<a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/${track}/" target="_blank">our download server</a>. +<a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/crispr10K/" target="_blank">our download server</a>. The files for this track are called <tt>crispr.bb</tt> and <tt>crisprDetails.tab</tt>. Individual regions or the whole genome annotation can be obtained using our tool <tt>bigBedToBed</tt>, which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tool can also be used to obtain only features within a given range, e.g. <tt>bigBedToBed -http://hgdownload.soe.ucsc.edu/gbdb/${db}/${track}/crispr.bb -chrom=chr21 +http://hgdownload.soe.ucsc.edu/gbdb/${db}/crispr10K/crispr.bb -chrom=chr21 -start=0 -end=1000000 stdout</tt> </p> <h2>Credits</h2> <p> Track created by Maximilian Haeussler, with helpful input from Jean-Paul Concordet (MNHN Paris) and Alberto Stolfi (NYU). This track was built with financial support from <a href="https://www.regeneron.com/" target="_blank">Regeneron, Inc.</a> </p> <a name="References"></a> <h2>References</h2> <p> Haeussler M, Schönig K, Eckert H, Eschstruth A, Mianné J, Renaud JB, Schneider-Maunoury S, Shkumatava A, Teboul L, Kent J <em>et al</em>.