d8159489a9a2b570997cbc8b198e193d850c65da
max
  Tue Oct 8 02:27:29 2019 -0700
adding a success message to clinvar otto job, no redmine

diff --git src/hg/utils/otto/clinvar/clinVarToBed src/hg/utils/otto/clinvar/clinVarToBed
index da8257e..c2b9ef3 100755
--- src/hg/utils/otto/clinvar/clinVarToBed
+++ src/hg/utils/otto/clinvar/clinVarToBed
@@ -539,15 +539,17 @@
     cmd = "bedToBigBed -tab -type=bed9+ -as=clinvar.as %s /hive/data/genomes/%s/chrom.sizes %s" % (fname, db, tmpFname)
     mustRun(cmd)
 
     tableName = outFname.split('.')[0] # e.g. clinvarMain
 
     tmpFnames.append( (db, tableName, tmpFname, outFname) )
 
 # make it atomic by renaming the temp files to the final file names at the very end
 for db, tableName, tmpFname, finalFname in tmpFnames:
     os.rename(tmpFname, finalFname)
 
 # make sure that the "Data last updated" in the table browser is correct
 for db, tableName, tmpFname, finalFname in tmpFnames:
     cmd = "hgBbiDbLink %s %s /gbdb/%s/bbi/clinvar/%s.bb" % (db, tableName, db, tableName)
     mustRun(cmd)
+
+print("ClinVar update end: OK")