07892d76d0c99f0a2130083b81287881fb048449 braney Fri Sep 27 10:35:44 2019 -0700 fix retro tables again diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner index 75b239d..0d26565 100644 --- src/hg/makeDb/schema/all.joiner +++ src/hg/makeDb/schema/all.joiner @@ -685,32 +685,30 @@ identifier refGeneRetro dependency "Link refGene to ucscRetroInfo" $ucscRetroDb.refGene.name dupeOk hg19.ucscRetroInfo4.refSeq minCheck=0.96 exclude=noRefSeq hg19.ucscRetroInfo5.refSeq minCheck=0.96 exclude=noRefSeq hg38.ucscRetroInfo9.refSeq minCheck=0.96 exclude=noRefSeq mm9.ucscRetroInfo1.refSeq minCheck=0.96 exclude=noRefSeq identifier knownGeneRetro dependency "Link knownGene to ucscRetroInfo" $ucscRetroDb.knownGene.name dupeOk chopAfter=. hg19.ucscRetroInfo4.kgName minCheck=0.96 exclude=noKg chopAfter=. hg19.ucscRetroInfo5.kgName minCheck=0.96 exclude=noKg chopAfter=. hg38.ucscRetroInfo9.kgName minCheck=0.96 exclude=noKg chopAfter=. mm9.ucscRetroInfo1.kgName minCheck=0.94 exclude=noKg chopAfter=. - mm10.ucscRetroInfo2.kgName minCheck=0.96 exclude=noKg chopAfter=. - mm10.ucscRetroInfo6.kgName minCheck=0.90 exclude=noKg chopAfter=. identifier ucscRetroInfo[1,2,4,5,6,9] dependency "Link together Ucsc Retrogenes and ucsc retroGene alignments" $ucscRetroDb.ucscRetroInfo[].name unique $ucscRetroDb.ucscRetroAli[].qName $ucscRetroDb.ucscRetroOrtho[].name $ucscRetroDb.ucscRetroExpressed[].name identifier ucscRetroOrtho[1,2,4,5,6,9] dependency "Link together Ucsc Retrogenes and ucsc retro orthology" $ucscRetroDb.ucscRetroAli[].qName dupeOk $ucscRetroDb.ucscRetroOrtho[].name identifier ucscRetroExtFileId[1,2,4,5,6,9] "External file ID for parent sequences for UCSC Retrogenes"