71820b924c4289d2213eab2ddb429afa95b6c056
braney
  Fri Sep 27 09:56:27 2019 -0700
some tweaks for mouse M20

diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner
index 2947005..75b239d 100644
--- src/hg/makeDb/schema/all.joiner
+++ src/hg/makeDb/schema/all.joiner
@@ -677,32 +677,30 @@
     $hg.encodePseudogeneHavana.name
     $hg.encodePseudogeneClass.name minCheck=0.17 unique
 
 identifier encodePseudogeneUcsc dependency
 "Link together Ucsc Retrogenes and class"
     $hg.encodePseudogeneUcsc.name dupeOk
     $hg.encodePseudogeneClass.name minCheck=0.22 unique
 
 identifier refGeneRetro dependency
 "Link refGene to ucscRetroInfo"
     $ucscRetroDb.refGene.name dupeOk
     hg19.ucscRetroInfo4.refSeq minCheck=0.96 exclude=noRefSeq
     hg19.ucscRetroInfo5.refSeq minCheck=0.96 exclude=noRefSeq
     hg38.ucscRetroInfo9.refSeq minCheck=0.96 exclude=noRefSeq
     mm9.ucscRetroInfo1.refSeq minCheck=0.96 exclude=noRefSeq
-    mm10.ucscRetroInfo2.refSeq minCheck=0.96 exclude=noRefSeq
-    mm10.ucscRetroInfo6.refSeq minCheck=0.96 exclude=noRefSeq
 
 identifier knownGeneRetro dependency
 "Link knownGene to ucscRetroInfo"
     $ucscRetroDb.knownGene.name dupeOk chopAfter=.
     hg19.ucscRetroInfo4.kgName minCheck=0.96 exclude=noKg chopAfter=.
     hg19.ucscRetroInfo5.kgName minCheck=0.96 exclude=noKg chopAfter=.
     hg38.ucscRetroInfo9.kgName minCheck=0.96 exclude=noKg chopAfter=.
     mm9.ucscRetroInfo1.kgName minCheck=0.94 exclude=noKg chopAfter=.
     mm10.ucscRetroInfo2.kgName minCheck=0.96 exclude=noKg chopAfter=.
     mm10.ucscRetroInfo6.kgName minCheck=0.90 exclude=noKg chopAfter=.
 
 identifier ucscRetroInfo[1,2,4,5,6,9] dependency
 "Link together Ucsc Retrogenes and ucsc retroGene alignments"
     $ucscRetroDb.ucscRetroInfo[].name unique
     $ucscRetroDb.ucscRetroAli[].qName
@@ -5522,35 +5520,36 @@
     $hg.humanHprdP2P.query
     $hg.humanHprdP2P.target
     $hg.humanVidalP2P.query
     $hg.humanVidalP2P.target
     $hg.humanWankerP2P.query
     $hg.humanWankerP2P.target
     $kgDb.kgColor.kgID full
     $kgDb.kg2ToKg3.newId minCheck=0.5 exclude=
     $kgDb.kg3ToKg4.oldId minCheck=0.5 exclude=
     $kgDb.kg3ToKg4.newId minCheck=0.5 exclude=
     $kgDb,!hg19.kg4ToKg5.newId minCheck=0.5 exclude=
     $kgDb,!mm10.kg5ToKg6.newId exclude=
     $kgDb,!mm10.kg6ToKg7.newId exclude=
     $kgDb,!mm10.kg7ToKg8.newId exclude=
     $kgDb,!mm10.kg8ToKg9.newId exclude=
-    $kgDb,!hg38.kg9ToKg10.newId exclude=
+    $kgDb,!hg38,!mm10.kg9ToKg10.newId exclude=
     $kgDb.kg10ToKg11.newId exclude=
     $kgDb,!hg16.kgTargetAli.qName full
     hg19.knownGeneTxMrna.name
     hg19.knownGeneTxPep.name
+    $kgDb.kg11ToKg12.newId exclude=
     $kgDb.knownAttrs.kgID
 
 identifier knownGeneOld10Id dependency
 "Previous UCSC Gene build"
     $kgDb.knownGeneOld10.name
     $kgDb.kg10ToKg11.oldId full
     $kgDb.kgXrefOld10.kgID full
     
 identifier knownGeneOld9Id dependency
 "Previous UCSC Gene build"
     $kgDb.knownGeneOld9.name
     $kgDb.kg9ToKg10.oldId full
     $kgDb.kgXrefOld9.kgID full
 
 identifier knownGeneOld8Id dependency