Commits for chmalee

v388_base to v389_preview (2019-09-23 to 2019-09-30) v389

1fbf0a4bf3e1a40b9a117893d61b395561779d7a Mon Sep 23 13:45:20 2019 -0700

• Adding archiving commands to otto build scripts, refs #21825
  • src/hg/utils/otto/decipher/checkDecipher.sh - lines changed 18, context: html, text, full: html, text
  • src/hg/utils/otto/geneReviews/checkGeneReviews.sh - lines changed 17, context: html, text, full: html, text
  • src/hg/utils/otto/gwas/checkGwas.sh - lines changed 17, context: html, text, full: html, text
  • src/hg/utils/otto/isca/checkISCA.sh - lines changed 38, context: html, text, full: html, text
  • src/hg/utils/otto/omim/checkOmim.sh - lines changed 16, context: html, text, full: html, text

bdd18de186c0f34406ca395e7ba9b1b88980587d Mon Sep 23 16:44:07 2019 -0700

• Optimizing the jstree on hgHubConnect by writing out a javascript object and letting ajax load the nodes of the tree on an as-needed basis. Also adding measureTiming to hgHubConnect, refs #23812
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 255, context: html, text, full: html, text
  • src/hg/js/hgHubConnect.js - lines changed 87, context: html, text, full: html, text

daf6b6d8252538b7cc1c8aaad253d5a6fb1aaec4 Tue Sep 24 12:35:44 2019 -0700

• Fixing dumb mistake in hub search where I initialized a variable in two different spots, refs #23812
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 15, context: html, text, full: html, text
  • src/hg/js/hgHubConnect.js - lines changed 8, context: html, text, full: html, text

1c1634ecde5730e83e599863eb4455d97cf80cd4 Wed Sep 25 09:45:03 2019 -0700

• Fixing two bugs with hub searching, one where I forgot to htmlEncode a result and one where I was preventing single click expand of the results tree, refs #23812
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 1, context: html, text, full: html, text
  • src/hg/js/hgHubConnect.js - lines changed 6, context: html, text, full: html, text

45f102e1f2780bf665ea9ece8afdbd6967eaea2f Wed Sep 25 11:48:23 2019 -0700

• When hubCheck is actually going out and getting bigDataUrls, we still want those errors in html output mode too, bug reported by Lou
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 2, context: html, text, full: html, text