94beebccbdcae3b709516cdacd2f42e2372ebae2 jnavarr5 Wed Sep 25 16:26:39 2019 -0700 Adding a note to other help pages about the 'useOneFile on' hub setting, refs #19383 diff --git src/hg/htdocs/goldenPath/help/hubQuickStart.html src/hg/htdocs/goldenPath/help/hubQuickStart.html index cb9fd49..3e42dfd 100755 --- src/hg/htdocs/goldenPath/help/hubQuickStart.html +++ src/hg/htdocs/goldenPath/help/hubQuickStart.html @@ -13,30 +13,34 @@ <p> <strong>STEP 1:</strong> In a publicly-accessible directory, copy the hub.txt, genomes.txt, trackDb.txt files using the following command: <pre><code>wget -r --no-parent --reject "index.html*" -nH --cut-dirs=3 http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/</code></pre> <p> Alternatively, <em>if you do not have wget installed</em>, use curl:<br> <pre><code>curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hub.txt curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/genomes.txt mkdir hg19 cd hg19 curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hg19/trackDb.txt</code></pre> <p> If you do not have curl, you can alternatively use a text editor and directly recreate the above three files.</p> <p> +<b>Note:</b> there is now a <code>useOneFile on</code> hub setting that allows the hub +properties to be specified in a single file. More information about this setting can be found on the +<a href="./hgTracksHelp.html#UseOneFile" target="_blank">Genome Browser User Guide</a>.</p> +<p> <strong>STEP 2:</strong> Paste your hub.txt link (<code>http://yourURL/hub.txt</code>) into the <a href="../../cgi-bin/hgHubConnect" target="_blank">My Hubs</a> tab of the Track Data Hubs page, then click the "Use Selected Hubs" button. It should work the same as pasting the original hub.txt file:</p> <pre><code>http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hub.txt</code></pre> <p> <strong>STEP 3:</strong> Congratulations! Your hub should display! If you are not already browsing the hg19 assembly on chr21, change assemblies and navigate to the gene <a href="../../cgi-bin/hgTracks?db=hg19&singleSearch=knownCanonical&position=SOD1" target="_blank">SOD1</a> to see data displayed for each of the hub's BAM, bigWig, bigBed, and VCF tracks.</p> <p> If you are having problems, be sure all your files and the hg19 directory are publicly-accessible. For hubs to work, your server must also accept byte-ranges. You can check using the following command to verify "Accept-Ranges: bytes" displays:</p>