Commits for kent

v388_base to v389_preview (2019-09-23 to 2019-09-30) v389

9f32d767827f01c3d380b57787d174aabbc6a4c0 Wed Sep 18 20:17:33 2019 -0700

• Fixed an edge case around missing contributor.
  • src/hca/fromGeo/geoToHcaStorm/geoToHcaStorm.c - lines changed 6, context: html, text, full: html, text

2fe474a25e247a186d1ba8890c9c70028fbad0e2 Wed Sep 18 20:19:17 2019 -0700

• Adding contributors to contact in hopes of unrolling them all and avoiding interns cutting and pasting long author lists.
  • src/hca/hcat/hcatTabUpdate/hcatTabUpdate.c - lines changed 26, context: html, text, full: html, text

6c9260361fe78a7fff407ddadf1ad99a5fea21f2 Wed Sep 18 20:21:24 2019 -0700

• Version 7 production/Version 8 dev begin checkin for Tuatara.
  • src/hca/hcat/mysite/hcat/admin.py - lines changed 3, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/api.py - lines changed 144, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/api_urls.py - lines changed 20, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/models.py - lines changed 23, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/urls.py - lines changed 8, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/views.py - lines changed 134, context: html, text, full: html, text
  • src/hca/hcat/mysite/mysite/urls.py - lines changed 1, context: html, text, full: html, text
  • src/hca/hcat/mysite/templates/admin/base_site.html - lines changed 1, context: html, text, full: html, text
  • src/hca/hcat/mysite/templates/hcat/project_list.html - lines changed 1, context: html, text, full: html, text
  • src/hca/hcat/mysite/versions.txt - lines changed 20, context: html, text, full: html, text

24780d64efc50758fa6360857db108ae821529bb Wed Sep 25 17:12:26 2019 -0700

• Added doc strings to all classes. Rearranged things per wranglers linking a bit, simplifying the wrangling aspects of a project. Separating wrangling_state from the main project state.
  • src/hca/hcat/mysite/hcat/models.py - lines changed 109, context: html, text, full: html, text

0ffc5d285457b0063015175086d20fbb0155feef Wed Sep 25 17:13:29 2019 -0700

• Getting rid of AssayType and some of the fields wranglers didn't want. Moved wrangling section to bottom. Overall maybe half way through wrangler requests that don't involve a new view.
  • src/hca/hcat/mysite/hcat/admin.py - lines changed 23, context: html, text, full: html, text

3efeb7ddb50d2fe9ad54cde63f0d6d5048cd7aec Wed Sep 25 17:16:10 2019 -0700

• Stripping out return of contact info other than name from public API pending discussion at least. Making project comments and contacts visible.
  • src/hca/hcat/mysite/hcat/api.py - lines changed 15, context: html, text, full: html, text

3d73498b2c0eaa16c71676f6a88f3e2d9d6315bd Wed Sep 25 17:17:00 2019 -0700

• Documenting changes so far in V0.8
  • src/hca/hcat/mysite/versions.txt - lines changed 9, context: html, text, full: html, text

243b5608315974e6830f2314908489fcf88084d1 Wed Sep 25 21:07:05 2019 -0700

• Removing old hcat/api urls since now have straight api urls.
  • src/hca/hcat/mysite/hcat/urls.py - lines changed 9, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/views.py - lines changed 127, context: html, text, full: html, text

8aaa6e02216f5a454a7bd64c180181dee2eab5cd Fri Sep 27 11:21:08 2019 -0700

• Implementing wrangler requests as described in versions.txt. Mostly this is trimming some things they felt were unneeded, renaming some fields, splitting apart project-status and wrangling-status, and moving the biological information up to a more visible part of the project details page in the admin. Also there is a tiny bit of experimenting on non-admin views.
  • src/hca/hcat/mysite/hcat/admin.py - lines changed 11, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/api.py - lines changed 8, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/api_urls.py - lines changed 1, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/models.py - lines changed 18, context: html, text, full: html, text
  • src/hca/hcat/mysite/hcat/urls.py - lines changed 1, context: html, text, full: html, text
  • src/hca/hcat/mysite/templates/hcat/project_list.html - lines changed 2, context: html, text, full: html, text
  • src/hca/hcat/mysite/versions.txt - lines changed 10, context: html, text, full: html, text