2a16ed67395107fb7a5104a88101107c8a3f9633
lrnassar
  Tue Sep 24 13:57:09 2019 -0700
Touching up MM descriptions page refs #24157

diff --git src/hg/makeDb/trackDb/human/mastermind.html src/hg/makeDb/trackDb/human/mastermind.html
index 8c9024b..2e99e53 100644
--- src/hg/makeDb/trackDb/human/mastermind.html
+++ src/hg/makeDb/trackDb/human/mastermind.html
@@ -22,75 +22,75 @@
 page</a> page. Advanced features require a license for the
 <a href="https://www.genomenon.com/mastermind-pro-upgrade/" target="_blank">Mastermind Professional Edition</a>, 
 which contains the same content but allows more comprehensive searches.
 </p>
 
 <h2>Display Conventions and Configuration</h2>
 
 <p>
 Genomic locations of variants are labeled with the nucleotide change.
 Hover over the features to see the gene, the amino acid change and the scores MMCNT1, MMCNT2 and 
 MMCNT3, described below. All other information is shown on the respective Mastermind variant detail
 page, accessible via the &quot;Protein change and link to details&quot; at the top of the details page. The
 features are colored based on their evidence:
 </p>
 
-<p>In Sep 2019, suggested by Genomenom, we added a filter on all variants. From then on, we skip variants with more than 
-one nucleotide and MMCNT is 0 and where the variant is not an idel, meaning
-that for longer variants, only variants are shown that are explicitely
+<p>In Sep 2019, suggested by Genomenom, we added a filter on all variants. From then on, we skip 
+variants with more than one nucleotide and a MMCNT of 0 and where the variant is not an indel, 
+meaning that for longer variants, only variants are shown that are explicitly
 mentioned in the papers. This makes the data more specific.
 </p>
 
 <p>
 <table>
   <thead>
   <tr>
     <th style="border-bottom: 2px solid #6678B1;">Color</th>
     <th style="border-bottom: 2px solid #6678B1;">Level of support</th>
   </tr>
   </thead>
   <tr>
     <th bgcolor="#0C0C78"></th>
     <th align="left">High: at least one paper mentions this exact cDNA change</th>
   </tr>
   <tr>
     <th bgcolor="#5050A0"></th>
     <th align="left">Medium: at least two paper mention a variant that leads to the same amino acid change</th>
   </tr>
   <tr>
     <th bgcolor="#8282D2"></th>
     <th align="left">Low: only a single paper mentions a variant that leads to the same amino acid change</th>
   </tr>
 </table>
 </p>
 
 <p>
-The three numbers that are shown on the mouse over and the details page have the following meaning (MM=Mastermind):
+The three numbers that are shown on the mouse-over and the details page have the following meaning (MM=Mastermind):
 <ul>
     <li><b>MMCNT1</b>: cDNA-level exact matches. This is the number of articles that mention the variant at the nucleotide level in either the title/abstract or the full-text.
     <li><b>MMCNT2</b>: cDNA-level possible matches. This is the number of articles with nucleotide-level matches (from 1) plus articles with protein-level matches in which the publication did not specify the cDNA-level change, meaning they could be referring to this nucleotide-level variant but there is insufficient data in these articles to determine conclusively.
     <li><b>MMCNT3</b>: This is the number of articles citing any variant resulting in the same biological effect as this variant. This includes the articles from MMCNT1 and MMCNT2 plus articles with alternative cDNA-level variants that result in the same protein effect.
 </ul>
-On the track setting page one can filter on these scores under the display mode section by entering
+On the track settings page one can filter on these scores under the display mode section by entering
 a minimum number of articles for each kind of evidence.
 
 </p>
 
 <h2>Methods</h2>
 
 <p>The Mastermind Cited Variants file was <a target=_blank href="https://www.genomenon.com/cvr/">downloaded</a>,
 converted to BED format with scripts that are available in our 
 <a target=_blank href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/makeDb/mastermind/">Git
 repository</a> and converted to a bigBed file with the UCSC genome browser tool
 bedToBigBed.</p>
 
 <p>This track is automatically updated two weeks after every Mastermind CVR release, which happens every three months.</p>
 
 
 <h2>Credits</h2>
 
 <p>
-Thanks to Mark Kiel, Steve Schwartz and Clayton Wheeler from Genomenon for making this data available.
+Thanks to Mark Kiel, Steve Schwartz and Clayton Wheeler from Genomenon for making these data available.
 </p>
 
 <!-- <h2>References</h2> -->