3deac615bc1604caf7e97bfe8c9dc97b15ca1332
lrnassar
Wed Sep 25 13:00:10 2019 -0700
Fixing MM github URL refs #24157
diff --git src/hg/makeDb/trackDb/human/mastermind.html src/hg/makeDb/trackDb/human/mastermind.html
index 7d1efe3..d4b33b1 100644
--- src/hg/makeDb/trackDb/human/mastermind.html
+++ src/hg/makeDb/trackDb/human/mastermind.html
@@ -68,30 +68,30 @@
The three numbers that are shown on the mouse-over and the details page have the following meaning (MM=Mastermind):
- MMCNT1: cDNA-level exact matches. This is the number of articles that mention the variant at the nucleotide level in either the title/abstract or the full-text.
- MMCNT2: cDNA-level possible matches. This is the number of articles with nucleotide-level matches (from 1) plus articles with protein-level matches in which the publication did not specify the cDNA-level change, meaning they could be referring to this nucleotide-level variant but there is insufficient data in these articles to determine conclusively.
- MMCNT3: This is the number of articles citing any variant resulting in the same biological effect as this variant. This includes the articles from MMCNT1 and MMCNT2 plus articles with alternative cDNA-level variants that result in the same protein effect.
On the track settings page one can filter on these scores under the display mode section by entering
a minimum number of articles for each kind of evidence.
Methods
The Mastermind Cited Variants file was downloaded,
converted to BED format with scripts that are available in our
-Git
+Git
repository and converted to a bigBed file with the UCSC genome browser tool
bedToBigBed.
This track is automatically updated two weeks after every Mastermind CVR release, which happens every three months.
Credits
Thanks to Mark Kiel, Steve Schwartz and Clayton Wheeler from Genomenon for making these data available.