6c02988b8ef7077f418bd3185126666f612759b1
markd
  Thu Sep 26 10:28:41 2019 -0700
import of gencode V32 final

diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt
index e9f593a..6f07418 100644
--- src/hg/makeDb/doc/hg38/gencode.txt
+++ src/hg/makeDb/doc/hg38/gencode.txt
@@ -530,16 +530,36 @@
     # If being pushed public, update 'Release Notes' in
     # human/hg38/wgEncodeGencodeSuper.html
 
     # edit human/hg38/trackDb.gencode.ra to add new .ra file include
     make DBS=hg38
 
     ## only if being pushed to RR:
     # edit all.joiner to add ~/tmp/gencodeV32.joiner
     # verify with:
     pushd /hive/data/genomes/hg38/bed/gencodeV32
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # commit all
     # if pushing public: add ticket and MARK QA READY
 
+2019-08-30: repeat above for final release
+    mv /hive/data/genomes/hg38/bed/gencodeV32 /hive/data/genomes/hg38/bed/gencodeV32pre
+    # redo do above imports
+
+    for t in tables/* ; do cmp ../gencodeV32pre/$t $t > ; done
+
+    Changes:
+    wgEncodeGencode2wayConsPseudoV32.gp 
+    wgEncodeGencodeAttrsV32.tab
+    wgEncodeGencodePolyaV32.gp
+    wgEncodeGencodeTagV32.tab
+    only attrs and maybe tags matter to hgGene gencode
+
+    mkdir pre-diffs
+    diff ../gencodeV32pre/tables/wgEncodeGencodeAttrsV32.tab tables/wgEncodeGencodeAttrsV32.tab >pre-diffs/wgEncodeGencodeAttrsV32.diff
+    diff ../gencodeV32pre/tables/wgEncodeGencodeTagV32.tab tables/wgEncodeGencodeTagV32.tab >pre-diffs/wgEncodeGencodeTagV32.diff
+
+    # attrs: experimental conformation level changed on a few pseudo genes
+    # tag: pseudo_consens changed on a few pseudo genes.
+
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