b7cb97d2942575d92f6385055e172dcbd979ee05
angie
  Tue Oct 1 13:09:29 2019 -0700
Adding new data type bigDbSnp.as with associated dbSnpDetails.as, for a track based on the new "dbSNP 2.0" schema and JSON downloads.  refs #23283

diff --git src/hg/lib/dbSnpDetails.as src/hg/lib/dbSnpDetails.as
new file mode 100644
index 0000000..ebff243
--- /dev/null
+++ src/hg/lib/dbSnpDetails.as
@@ -0,0 +1,17 @@
+table dbSnpDetails
+"dbSNP annotations that are too lengthy to include in bigDbSnp file; for variant details page"
+    (
+    string    name;            "rs# ID of variant"
+    int freqSourceCount;       "Number of frequency sources"
+    string[freqSourceCount] alleleCounts;  "Array of each source's |-sep list of allele:count"
+    int[freqSourceCount] alleleTotals; "Array of each source's total number of chromosomes sampled; may be > sum of observed counts and differ across variants."
+    int soTermCount;           "Number of distinct SO terms annotated on variant"
+    int[soTermCount] soTerms;  "SO term numbers annotated on RefSeq transcripts"
+    int clinVarCount;          "Number of ClinVar accessions associated with variant"
+    string[clinVarCount] clinVarAccs;  "ClinVar accessions associated with variant"
+    string[clinVarCount] clinVarSigs;  "ClinVar significance for each accession"
+    int submitterCount;                "Number of organizations/projects that reported variant"
+    string[submitterCount] submitters; "dbSNP 'handles' of submitting orgs/projects"
+    int pubMedIdCount;         "Number of PubMed-indexed publications associated with variant"
+    int [pubMedIdCount]pubMedIds;      "PMIDs of associated publications"
+    )