caba141a549362bfd5a24f8bf25a060b9595aa75 dschmelt Wed Oct 2 16:01:03 2019 -0700 Adding reference to searchable track hub #20881 diff --git src/hg/htdocs/goldenPath/help/trix.html src/hg/htdocs/goldenPath/help/trix.html index 507b652..60915ac 100755 --- src/hg/htdocs/goldenPath/help/trix.html +++ src/hg/htdocs/goldenPath/help/trix.html @@ -1,34 +1,38 @@ <!DOCTYPE html> <!--#set var="TITLE" value="Genome Browser Trix Indices" --> <!--#set var="ROOT" value="../.." --> <!-- Relative paths to support mirror sites with non-standard GB docs install --> <!--#include virtual="$ROOT/inc/gbPageStart.html" --> <h1>Trix Indices</h1> <p> A Trix index consists of a pair of files that allow for fast look-up of free text associated with a list of identifiers. The index is created from a single line-oriented text file using the program <code>ixIxx</code>. Each line in the text file starts with an identifier, followed by free text -associated with the ID.</p> +associated with the ID. For a more complete description of how to make a searchable track hub (or +custom track), please visit the <a href="hubQuickStartSearch.html" target="_blank">Quick Start +Guide to Searchable track hubs</a>.</p> <p> To complete the steps below you must first download the <code>ixIxx</code> utility. For more information on downloading our command line utilities, see these <a href="http://hgdownload.soe.ucsc.edu/downloads.html#source_downloads">instructions</a>.</p> <p> To create a Trix index, follow these steps: <ol> <li> Prepare a text file that associates your IDs with free text:<br> <pre><code> id1 this is text for id1 id2 this is text for id2 id3 this is text for id3</code></pre></li> <li> Run the <code>ixIxx</code> program on your text file.<br> <pre><code> ixIxx input.txt myTrix.ix myTrix.ixx</code></pre></li> </ol> <p> If you want to use your Trix index in a track hub, see the <code>searchTrix</code> setting in the -<a href="trackDb/trackDbHub.html#searchTrix">Track Database Definition Document</a> for more information.</p> +<a href="trackDb/trackDbHub.html#searchTrix">Track Database Definition Document</a> or the +<a href="hubQuickStartSearch.html" target="_blank">Quick Start Guide to Searchable track hubs</a> +for more information.</p> <!--#include virtual="$ROOT/inc/gbPageEnd.html" -->