a8a5aadd1e6a8d5faf9625f4b51ab4bbc5134000
markd
  Tue Oct 1 12:10:54 2019 -0700
import of gencode V32lift37 release

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index a4b90bd..9750994 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -33522,30 +33522,34 @@
     ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg19 32lift37 98 'Sept 2019'
 
     # Update human/hg19/wgEncodeGencodeSuper.html and update 'Release Notes'
     # to describe new release. [ONLY if it's going to be pushed]
 
     # edit human/hg19/trackDb.wgEncode.ra to add new .ra file include
     make DBS=hg19
 
     # edit  all.joiner to add ~/tmp/gencodeV32lift37.joiner
     # verify with:
     pushd /hive/data/genomes/hg19/bed/gencodeV32lift37
     make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # commit all
 
+2019-08-30: repeat above for final release
+    mv /hive/data/genomes/hg19/bed/gencodeV32lift37 /hive/data/genomes/hg19/bed/gencodeV32lift37pre
+    # redo do above imports
+
 ##############################################################################
 # LASTZ human/hg19 Tree chimp/rheMac10 - (DONE - 2019-07-09 - Hiram)
     mkdir /hive/data/genomes/hg19/bed/lastzRheMac10.2019-07-09
     cd /hive/data/genomes/hg19/bed/lastzRheMac10.2019-07-09
 
     printf '# human vs macaca mulatta
 BLASTZ=/cluster/bin/penn/lastz-distrib-1.04.00/bin/lastz
 # maximum M allowed with lastz is only 254
 BLASTZ_M=254
 BLASTZ_Q=/hive/data/staging/data/blastz/human_chimp.v2.q
 BLASTZ_O=600
 BLASTZ_E=150
 # other parameters from panTro2 vs hg18 lastz on advice from Webb
 BLASTZ_K=4500
 BLASTZ_Y=15000