46a0545522c321cc4774ae6e1fdafcefefaa03b9
markd
  Thu Sep 26 11:46:39 2019 -0700
import of GENCODE VM23

diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt
index befded6..44448a1 100644
--- src/hg/makeDb/doc/hg38/gencode.txt
+++ src/hg/makeDb/doc/hg38/gencode.txt
@@ -534,31 +534,31 @@
     make DBS=hg38
 
     ## only if being pushed to RR:
     # edit all.joiner to add ~/tmp/gencodeV32.joiner
     # verify with:
     pushd /hive/data/genomes/hg38/bed/gencodeV32
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # commit all
     # if pushing public: add ticket and MARK QA READY
 
 2019-08-30: repeat above for final release
     mv /hive/data/genomes/hg38/bed/gencodeV32 /hive/data/genomes/hg38/bed/gencodeV32pre
     # redo do above imports
 
-    for t in tables/* ; do cmp ../gencodeV32pre/$t $t > ; done
+    for t in tables/* ; do cmp ../gencodeV32pre/$t $t ; done
 
     Changes:
     wgEncodeGencode2wayConsPseudoV32.gp 
     wgEncodeGencodeAttrsV32.tab
     wgEncodeGencodePolyaV32.gp
     wgEncodeGencodeTagV32.tab
     only attrs and maybe tags matter to hgGene gencode
 
     mkdir pre-diffs
     diff ../gencodeV32pre/tables/wgEncodeGencodeAttrsV32.tab tables/wgEncodeGencodeAttrsV32.tab >pre-diffs/wgEncodeGencodeAttrsV32.diff
     diff ../gencodeV32pre/tables/wgEncodeGencodeTagV32.tab tables/wgEncodeGencodeTagV32.tab >pre-diffs/wgEncodeGencodeTagV32.diff
 
     # wgEncodeGencodeAttrsV32: experimental conformation level changed on a few pseudogenes
     # wgEncodeGencodeTagV32: pseudo_consens changed on a few pseudogenes.