46a0545522c321cc4774ae6e1fdafcefefaa03b9
markd
  Thu Sep 26 11:46:39 2019 -0700
import of GENCODE VM23

diff --git src/hg/makeDb/doc/mm10.txt src/hg/makeDb/doc/mm10.txt
index 7aba9a1..a921af6 100644
--- src/hg/makeDb/doc/mm10.txt
+++ src/hg/makeDb/doc/mm10.txt
@@ -18107,18 +18107,37 @@
     # If being pushed public, update 'Release Notes' in
     # human/mm10/wgEncodeGencodeSuper.html
 
     # edit human/mm10/trackDb.gencode.ra to add new .ra file include
     make DBS=mm10
 
     ## only if being pushed to RR:
     # edit all.joiner to add ~/tmp/gencodeVM23.joiner
     # verify with:
     pushd /hive/data/genomes/mm10/bed/gencodeVM23
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # commit all
     # if pushing public: add ticket and MARK QA READY
 
-    # 
+2019-08-30: repeat above for final release
+    mv /hive/data/genomes/mm10/bed/gencodeVM23 /hive/data/genomes/mm10/bed/gencodeVM23pre
+    # redo do above imports
+
+    for t in tables/* ; do cmp ../gencodeVM23pre/$t $t ; done
+
+    Changes:
+    wgEncodeGencode2wayConsPseudoVM23.gp 
+    wgEncodeGencodeAttrsVM23.tab
+    wgEncodeGencodePolyaVM23.gp
+    wgEncodeGencodeTagVM23.tab
+    only attrs and maybe tags matter to hgGene gencode
+
+    mkdir pre-diffs
+    diff ../gencodeVM23pre/tables/wgEncodeGencodeAttrsVM23.tab tables/wgEncodeGencodeAttrsVM23.tab >pre-diffs/wgEncodeGencodeAttrsVM23.diff
+    diff ../gencodeVM23pre/tables/wgEncodeGencodeTagVM23.tab tables/wgEncodeGencodeTagVM23.tab >pre-diffs/wgEncodeGencodeTagVM23.diff
+
+    # wgEncodeGencodeAttrsVM23: experimental conformation level changed on a few pseudogenes
+    # wgEncodeGencodeTagVM23: pseudo_consens changed on a few pseudogenes.
+
 
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