46a0545522c321cc4774ae6e1fdafcefefaa03b9 markd Thu Sep 26 11:46:39 2019 -0700 import of GENCODE VM23 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 9cf9572..a15a4d7 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -23,33 +23,33 @@ SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## -db = hg38 +#db = hg38 #db = hg19 -#db = mm10 +db = mm10 preRelease = no #preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 ver = M23 prevVer = M22 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 97_39 ensemblPrevVer = 96_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 32