acca3deffc05c4d8d11590a1cf3d893763254712
angie
  Thu Oct 31 13:43:05 2019 -0700
dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome.  refs #23283

diff --git src/hg/inc/bigDbSnp.h src/hg/inc/bigDbSnp.h
index 6a82ec5..dcfd84f 100644
--- src/hg/inc/bigDbSnp.h
+++ src/hg/inc/bigDbSnp.h
@@ -73,39 +73,44 @@
 /* Print out bigDbSnp.  Separate fields with sep. Follow last field with lastSep. */
 
 #define bigDbSnpTabOut(el,f) bigDbSnpOutput(el,f,'\t','\n');
 /* Print out bigDbSnp as a line in a tab-separated file. */
 
 #define bigDbSnpCommaOut(el,f) bigDbSnpOutput(el,f,',',',');
 /* Print out bigDbSnp as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 // ucscNotes is a comma-separated list of these values.  Developer: if you add a new one here,
 // then also update the descriptions used by bigDbSnpDescribeUcscNote in bigDbSnp.c.
 #define bdsAltIsAmbiguous "altIsAmbiguous"
 #define bdsClassMismatch "classMismatch"
 #define bdsClinvar "clinvar"
+#define bdsClinvarBenign "clinvarBenign"
+#define bdsClinvarConflicting "clinvarConflicting"
+#define bdsClinvarPathogenic "clinvarPathogenic"
 #define bdsClusterError "clusterError"
 #define bdsCommonAll "commonAll"
 #define bdsCommonSome "commonSome"
 #define bdsDiffMajor "diffMajor"
 #define bdsFreqIsAmbiguous "freqIsAmbiguous"
 #define bdsFreqNotRefAlt "freqNotRefAlt"
 #define bdsMultiMap "multiMap"
 #define bdsOverlapDiffClass "overlapDiffClass"
 #define bdsOverlapSameClass "overlapSameClass"
+#define bdsRareAll "rareAll"
+#define bdsRareSome "rareSome"
 #define bdsRefIsAmbiguous "refIsAmbiguous"
 #define bdsRefIsMinor "refIsMinor"
 #define bdsRefIsRare "refIsRare"
 #define bdsRefIsSingleton "refIsSingleton"
 #define bdsRefMismatch "refMismatch"
 #define bdsRevStrand "revStrand"
 
 char *bigDbSnpDescribeUcscNote(char *ucscNote);
 /* Return a string describing ucscNote, unless it is unrecognized in which case return NULL.
  * Do not free returned value. */
 
 char *bigDbSnpClassToString(enum bigDbSnpClass class);
 /* Return the string version of enum bigDbSnpClass.  Do not free result. */
 
 char *bigDbSnpAbbrevAllele(char *allele, char *buf, size_t bufLen);