2693ceee58c1848dbe7f051f5107a6e60406dc62
ccpowell
  Thu Oct 31 16:04:27 2019 -0700
Updating release docs for ENCODE 3 Reg. supertrack, refs #23880

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     </div>
     <div class="col-sm-3">
       <ul>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2019 archived news ============= -->
 <a name="2019"></a>
 
+<a name="110119"></a>
+<h2>Nov. 1, 2019 &nbsp;&nbsp; New ENCODE 3 Regulation super-track set available on mouse (GRCm38/mm10) assembly</h2>
+<p>
+We are pleased to announce the new <a target="_blank" 
+href="../cgi-bin/hgTrackUi?db=mm10&g=encode3Reg">ENCODE 3 Regulation super-track</a>
+for the mouse (GRCm38/mm10) assembly. The <a target="_blank" href="https://www.genome.gov/Funded-Programs-Projects/ENCODE-Project-ENCyclopedia-Of-DNA-Elements">ENCODE project</a> 
+has established an epigenomic resource for mammalian development, profiling a diverse panel of
+mouse tissues at eight developmental stages from 10.5 days post conception until birth. The ENCODE
+3 Regulation super-track is composed of the three following composite tracks:
+<ul>
+  <li> <a target="_blank" href="../cgi-bin/hgTrackUi?db=mm10&g=encode3RenChromHmm">Chromatin State</a> - 
+  presents chromatin state annotations derived from ChIP-seq of histone modifications.</li>
+  <li> <a target="_blank" href="../cgi-bin/hgTrackUi?db=mm10&g=encode3RenHistone">Histone Modifications</a> -
+  presents the results of a comprehensive study of chromatin state across these developmental
+  stages, based on 1,128 ChiP-seq assays of 8 histone modifications in 12 tissues.</li>
+  <li> <a target="_blank" href="../cgi-bin/hgTrackUi?db=mm10&g=encode3RenAtac">Open Chromatin</a> -
+  presents the results of a comprehensive study of chromatin accessibility across these
+  developmental stages, based on 122 ATAC-seq assays in 12 tissues.</li>
+</ul></p>
+<p class="text-center">
+  <img class='text-center' src="../images/enR.png" width='700' alt="Example of the ENCODE 3 Regulation supertrack">
+</p>
+
+<p>
+Thanks to David Gorkin and Yanxiao Zhang at the <a target="_blank"
+href="http://renlab.sdsc.edu/renlab_website//">Ren lab (UCSD/Ludwig Institute for Cancer Research)</a>
+and Iros Barozzi of the <a target="_blank" 
+href="https://biosciences.lbl.gov/divisions/egsb/">Environmental Genomics and Systems Biology Division</a>
+at the Lawrence Berkeley National Laboratory for providing this data and assisting with track
+development at UCSC. We would also like to thank Kate Rosenbloom, Conner Powell and the UCSC Genome
+Browser team for their efforts on this release.
+</p>
+
+
 <a name="102819"></a>
 <h2>Oct. 28, 2019 &nbsp;&nbsp; gnomAD data now available on human (GRCh38/hg38) assembly</h2>
 <p>
 We are pleased to announce the new <a target="_blank" 
 href="../cgi-bin/hgTrackUi?db=hg38&c=chr22&g=gnomadVariants">gnomAD Variants super-track</a>
 for the Human (GRCh38/hg38) assembly. This super-track currently includes <strong>gnomAD v3</strong>
 and <strong>gnomAD v2</strong>.</p>
 <p>
 <a target="_blank" 
 href="../cgi-bin/hgTrackUi?db=hg38&c=chr22&g=gnomadGenomesVariantsV3"><strong>gnomAD v3</strong></a>
 contains variants from 71,702 whole genomes (and no exomes), all mapped to the GRCh38/hg38
 reference sequence. For more information on gnomAD v3, see the following
 <a target="_blank" href="https://macarthurlab.org/2019/10/16/gnomad-v3-0/">blog post</a>.</p>
 <p>
 <a target="_blank"