a802e81d2d9370c88efa7153e9f3f4d5bec52e28 jnavarr5 Thu Oct 31 16:32:54 2019 -0700 Announcing the LRG update for hg19 and hg38, refs #24285 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index aec471d..6936b92 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,45 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> +<a name="103119"></a> +<h2>Oct. 31, 2019 Locus Reference Genomic (LRG) update for human</h2> +<p> +We are pleased to announce an update to the Locus Reference Genomic (LRG) regions track for human, +(<a href="../../cgi-bin/hgTrackUi?db=hg19&c=chrX&g=lrg" target="_blank">GRCh37/hg19</a>) and +<a href="../../cgi-vin/hgTracksUi?db=hg38&c=chrX&g=lrg" target="_blank">(GRCh38/hg38)</a>. Each LRG +record also includes at least one stable transcript on which variants may be reported. These +transcripts appear in the LRG Transcripts track in the Gene and Gene Predictions track section.</p> +<p> +This track was produced at UCSC using <a href="ftp://ftp.ebi.ac.uk/pub/databases/lrgex/" +target="_blank">LRG XML files</a>. Thanks to +<a href="http://www.lrg-sequence.org/documentation/lrg-collaborators/" +target="_blank">LRG collaborators</a> for making these data available. We would also like to thank +Angie Hinrichs and Jairo Navarro for creating and releasing these tracks.</p> + <a name="102819"></a> <h2>Oct. 28, 2019 gnomAD data now available on human (GRCh38/hg38) assembly</h2> <p> We are pleased to announce the new <a target="_blank" href="../cgi-bin/hgTrackUi?db=hg38&c=chr22&g=gnomadVariants">gnomAD Variants super-track</a> for the Human (GRCh38/hg38) assembly. This super-track currently includes <strong>gnomAD v3</strong> and <strong>gnomAD v2</strong>.</p> <p> <a target="_blank" href="../cgi-bin/hgTrackUi?db=hg38&c=chr22&g=gnomadGenomesVariantsV3"><strong>gnomAD v3</strong></a> contains variants from 71,702 whole genomes (and no exomes), all mapped to the GRCh38/hg38 reference sequence. For more information on gnomAD v3, see the following <a target="_blank" href="https://macarthurlab.org/2019/10/16/gnomad-v3-0/">blog post</a>.</p> <p> <a target="_blank"