e336d663540641bf7e423e9398035a4a612b144f
Merge parents a802e81 8260118
jnavarr5
  Thu Oct 31 16:43:13 2019 -0700
Fixing a merge conflict. Commenting out Connor's announcement until tomorrow. Announcing the LRG update for hg19 and hg38, refs #24285

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        </ul>
      </div>
      <div class="col-sm-3">
        <ul>
          <li><a href="#2004">2004 News</a></li>
          <li><a href="#2003">2003 News</a></li>
          <li><a href="#2002">2002 News</a></li>
          <li><a href="#2001">2001 News</a></li>
        </ul>
      </div>
    </div>
  </div>
  
  <!-- ============= 2019 archived news ============= -->
  <a name="2019"></a>
 -
++<!--
+ <a name="110119"></a>
+ <h2>Nov. 1, 2019 &nbsp;&nbsp; New ENCODE 3 Regulation super-track set available on mouse (GRCm38/mm10) assembly</h2>
+ <p>
+ We are pleased to announce the new <a target="_blank" 
+ href="../cgi-bin/hgTrackUi?db=mm10&g=encode3Reg">ENCODE 3 Regulation super-track</a>
+ for the mouse (GRCm38/mm10) assembly. The <a target="_blank" href="https://www.genome.gov/Funded-Programs-Projects/ENCODE-Project-ENCyclopedia-Of-DNA-Elements">ENCODE project</a> 
+ has established an epigenomic resource for mammalian development, profiling a diverse panel of
+ mouse tissues at eight developmental stages from 10.5 days post conception until birth. The ENCODE
+ 3 Regulation super-track is composed of the three following composite tracks:
+ <ul>
+   <li> <a target="_blank" href="../cgi-bin/hgTrackUi?db=mm10&g=encode3RenChromHmm">Chromatin State</a> - 
+   presents chromatin state annotations derived from ChIP-seq of histone modifications.</li>
+   <li> <a target="_blank" href="../cgi-bin/hgTrackUi?db=mm10&g=encode3RenHistone">Histone Modifications</a> -
+   presents the results of a comprehensive study of chromatin state across these developmental
+   stages, based on 1,128 ChiP-seq assays of 8 histone modifications in 12 tissues.</li>
+   <li> <a target="_blank" href="../cgi-bin/hgTrackUi?db=mm10&g=encode3RenAtac">Open Chromatin</a> -
+   presents the results of a comprehensive study of chromatin accessibility across these
+   developmental stages, based on 122 ATAC-seq assays in 12 tissues.</li>
+ </ul></p>
+ <p class="text-center">
+   <img class='text-center' src="../images/enR.png" width='700' alt="Example of the ENCODE 3 Regulation supertrack">
+ </p>
  
+ <p>
+ Thanks to David Gorkin and Yanxiao Zhang at the <a target="_blank"
+ href="http://renlab.sdsc.edu/renlab_website//">Ren lab (UCSD/Ludwig Institute for Cancer Research)</a>
+ and Iros Barozzi of the <a target="_blank" 
+ href="https://biosciences.lbl.gov/divisions/egsb/">Environmental Genomics and Systems Biology Division</a>
+ at the Lawrence Berkeley National Laboratory for providing this data and assisting with track
+ development at UCSC. We would also like to thank Kate Rosenbloom, Conner Powell and the UCSC Genome
+ Browser team for their efforts on this release.
+ </p>
 -
++-->
 +<a name="103119"></a>
 +<h2>Oct. 31, 2019 &nbsp;&nbsp; Locus Reference Genomic (LRG) update for human</h2>
 +<p>
 +We are pleased to announce an update to the Locus Reference Genomic (LRG) regions track for human,
 +(<a href="../../cgi-bin/hgTrackUi?db=hg19&c=chrX&g=lrg" target="_blank">GRCh37/hg19</a>) and
 +<a href="../../cgi-vin/hgTracksUi?db=hg38&c=chrX&g=lrg" target="_blank">(GRCh38/hg38)</a>. Each LRG
 +record also includes at least one stable transcript on which variants may be reported. These
 +transcripts appear in the LRG Transcripts track in the Gene and Gene Predictions track section.</p>
 +<p>
 +This track was produced at UCSC using <a href="ftp://ftp.ebi.ac.uk/pub/databases/lrgex/"
 +target="_blank">LRG XML files</a>. Thanks to
 +<a href="http://www.lrg-sequence.org/documentation/lrg-collaborators/"
 +target="_blank">LRG collaborators</a> for making these data available. We would also like to thank
 +Angie Hinrichs and Jairo Navarro for creating and releasing these tracks.</p>
  
  <a name="102819"></a>
  <h2>Oct. 28, 2019 &nbsp;&nbsp; gnomAD data now available on human (GRCh38/hg38) assembly</h2>
  <p>
  We are pleased to announce the new <a target="_blank" 
  href="../cgi-bin/hgTrackUi?db=hg38&c=chr22&g=gnomadVariants">gnomAD Variants super-track</a>
  for the Human (GRCh38/hg38) assembly. This super-track currently includes <strong>gnomAD v3</strong>
  and <strong>gnomAD v2</strong>.</p>
  <p>
  <a target="_blank" 
  href="../cgi-bin/hgTrackUi?db=hg38&c=chr22&g=gnomadGenomesVariantsV3"><strong>gnomAD v3</strong></a>
  contains variants from 71,702 whole genomes (and no exomes), all mapped to the GRCh38/hg38
  reference sequence. For more information on gnomAD v3, see the following
  <a target="_blank" href="https://macarthurlab.org/2019/10/16/gnomad-v3-0/">blog post</a>.</p>
  <p>