60ec88a5ecc6afec9f5b5007876eee53d0300c37
ccpowell
  Mon Oct 14 16:43:57 2019 -0700
Updating newsArch.html for GENCODE V32 and VM23 release, refs #24087

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     </div>
     <div class="col-sm-3">
       <ul>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2019 archived news ============= -->
 <a name="2019"></a>
 
+<a name="101519"></a>
+<h2>Oct. 15, 2019 &nbsp;&nbsp; New GENCODE gene tracks for human (V32) and mouse (VM23)</h2>
+<p>
+We are pleased to announce the release of the new GENCODE Gene annotation track for both
+<a href="../cgi-bin/hgTracks?db=hg38&g=knownGene" target="_blank">hg38/GRCh37</a> and 
+<a href="../cgi-bin/hgTracks?db=mm10&g=knownGene" target="_blank">mm10/GRCm38</a> assemblies
+corresponding to the
+<a href="http://www.ensembl.info/2019/09/26/ensembl-98-has-been-released/" target="_blank">
+Ensembl 98</a> release.</p>
+
+<p>
+The following table provides statistics for the 
+<a href="../cgi-bin/hgTrackUi?db=hg38&g=knownGene" target="_blank">human V32</a> and 
+<a href="../cgi-bin/hgTrackUi?db=mm10&g=knownGene" target="_blank">mouse VM23</a> releases derived
+from the GTF files that contains annotations only on the main chromosomes. More information on how
+they were generated can be found in the
+<a href="https://www.gencodegenes.org/" target="_blank">GENCODE site</a>.
+<table>
+ <tr><th>Genes &amp; transcripts</th><th>human V32 Release stats</th><th>mouse V23 Release stats</th></tr>
+ <tr><th>Protein-coding Genes</th><td>19,965</td><td>21,849</td></tr>
+ <tr><th>Protein-coding transcripts</th><td>83,986</td><td>59,188</td></tr>
+ <tr><th>Long non-coding RNA genes</th><td>17,910</td><td>13,201</td></tr>
+ <tr><th>Small non-coding RNA genes</th><td>7,576</td><td>6,108</td></tr>
+</table>
+
+<p>
+More details about the new GENCODE track can be found on the resepctive GENCODE description pages.
+We would like to thank the GENCODE team and thank Brian Raney, Mark Diekhans, Jairo Navarro and
+Conner Powell at UCSC for their work on this track.</p>
+
 <a name="101119"></a>
 <h2>Oct. 11, 2019 &nbsp;&nbsp; New "group auto-scale" option</h2>
 <p>
 A new &quot;group auto-scale&quot; option is now available for signal tracks
 collected together in composites. The original auto-scale setting, which is still
 available, acts to auto-scale each track individually inside a composite group.
 With the new &quot;group auto-scale&quot; setting, all of the tracks within the
 composite will scale to the track with the highest auto-scale value viewed in the region.</p>
 <p>
 For example, below is a side-by-side image of two views of the same data from
 a selection of cell lines within a composite of related RNA-seq experiments. On
 the left is the original &quot;auto-scale to data view&quot; setting, where each track is
 auto-scaled to appear at each track's highest value. And on the right is
 the new &quot;group auto-scale&quot; setting for the same RNA-seq data where all tracks
 are scaled against the one track in the region that has the highest value