b9c4a07036e2828851f7e8558c267d7ce86823f9 ccpowell Wed Oct 16 09:41:52 2019 -0700 Editing the newarch.html for the GENCODE Genes release, refs #24087 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 068b37e..beda37a 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,58 +39,61 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> -<a name="101519"></a> -<h2>Oct. 15, 2019 New GENCODE gene tracks for human (V32) and mouse (VM23)</h2> +<a name="101619"></a> +<h2>Oct. 16, 2019 New GENCODE Genes tracks for human (V32) and mouse (VM23)</h2> <p> -We are pleased to announce the release of the new GENCODE Gene annotation track for both +We are pleased to announce the release of updated GENCODE Genes annotation tracks for both the <a href="../cgi-bin/hgTracks?db=hg38&g=knownGene" target="_blank">hg38/GRCh37</a> and <a href="../cgi-bin/hgTracks?db=mm10&g=knownGene" target="_blank">mm10/GRCm38</a> assemblies corresponding to the <a href="http://www.ensembl.info/2019/09/26/ensembl-98-has-been-released/" target="_blank"> Ensembl 98</a> release.</p> <p> The following table provides statistics for the <a href="../cgi-bin/hgTrackUi?db=hg38&g=knownGene" target="_blank">human V32</a> and <a href="../cgi-bin/hgTrackUi?db=mm10&g=knownGene" target="_blank">mouse VM23</a> releases derived from the GTF files that contains annotations only on the main chromosomes. More information on how -they were generated can be found in the +these statistics were generated can be found on the <a href="https://www.gencodegenes.org/" target="_blank">GENCODE site</a>. -<table> + +<div align="center"> +<table class="stdTbl"> <tr><th>Genes & transcripts</th><th>human V32 Release stats</th><th>mouse V23 Release stats</th></tr> - <tr><th>Protein-coding Genes</th><td>19,965</td><td>21,849</td></tr> - <tr><th>Protein-coding transcripts</th><td>83,986</td><td>59,188</td></tr> - <tr><th>Long non-coding RNA genes</th><td>17,910</td><td>13,201</td></tr> - <tr><th>Small non-coding RNA genes</th><td>7,576</td><td>6,108</td></tr> -</table> + <tr><th>Protein-coding Genes</th><td style="text-align:center">19,965</td><td style="text-align:center">21,849</td></tr> + <tr><th>Protein-coding transcripts</th><td style="text-align:center">83,986</td><td style="text-align:center">59,188</td></tr> + <tr><th>Long non-coding RNA genes</th><td style="text-align:center">17,910</td><td style="text-align:center">13,201</td></tr> + <tr><th>Small non-coding RNA genes</th><td style="text-align:center">7,576</td><td style="text-align:center">6,108</td></tr> + <tr><th>Psuedogenes</th><td style="text-align:center">14,749</td><td style="text-align:center">13,681</td></tr> +</table></div> <p> More details about the new GENCODE track can be found on the resepctive GENCODE description pages. -We would like to thank the GENCODE team and thank Brian Raney, Mark Diekhans, Jairo Navarro and +We would like to thank the GENCODE team and thank Brian Raney, Mark Diekhans, Jairo Navarro, and Conner Powell at UCSC for their work on this track.</p> <a name="101119"></a> <h2>Oct. 11, 2019 New "group auto-scale" option</h2> <p> A new "group auto-scale" option is now available for signal tracks collected together in composites. The original auto-scale setting, which is still available, acts to auto-scale each track individually inside a composite group. With the new "group auto-scale" setting, all of the tracks within the composite will scale to the track with the highest auto-scale value viewed in the region.</p> <p> For example, below is a side-by-side image of two views of the same data from a selection of cell lines within a composite of related RNA-seq experiments. On the left is the original "auto-scale to data view" setting, where each track is auto-scaled to appear at each track's highest value. And on the right is